(15 nodes) SMN-Sm protein complex network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_12374	Uncharacterized protein. (1072 aa)
	DUI87_32625	Small nuclear ribonucleoprotein G. (76 aa)
	DUI87_24057	Uncharacterized protein; Belongs to the DEAD box helicase family. (788 aa)
	DUI87_23953	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	DUI87_19912	WD_REPEATS_REGION domain-containing protein. (1135 aa)
	DUI87_26741	WD_REPEATS_REGION domain-containing protein. (1490 aa)
	DUI87_20611	Sm domain-containing protein. (91 aa)
	DUI87_18527	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (96 aa)
	DUI87_17551	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	DUI87_15886	Uncharacterized protein. (284 aa)
	DUI87_23214	Uncharacterized protein. (213 aa)
	DUI87_15271	Uncharacterized protein. (139 aa)
	DUI87_00712	Tudor domain-containing protein. (281 aa)
	DUI87_00115	Small nuclear ribonucleoprotein Sm D2. (139 aa)
	DUI87_00045	Uncharacterized protein. (122 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00045	DUI87_00115	A0A3M0LVL3	A0A3M0LFU3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.698
DUI87_00045	DUI87_00712	A0A3M0LVL3	A0A3M0LAG9	Uncharacterized protein.	Tudor domain-containing protein.	0.980
DUI87_00045	DUI87_12374	A0A3M0LVL3	A0A3M0KBU2	Uncharacterized protein.	Uncharacterized protein.	0.989
DUI87_00045	DUI87_15271	A0A3M0LVL3	A0A3M0K3N5	Uncharacterized protein.	Uncharacterized protein.	0.897
DUI87_00045	DUI87_15886	A0A3M0LVL3	A0A3M0JZR7	Uncharacterized protein.	Uncharacterized protein.	0.996
DUI87_00045	DUI87_17551	A0A3M0LVL3	A0A3M0JYE3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.779
DUI87_00045	DUI87_18527	A0A3M0LVL3	A0A3M0JX46	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.836
DUI87_00045	DUI87_19912	A0A3M0LVL3	A0A3M0JNZ9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.933
DUI87_00045	DUI87_20611	A0A3M0LVL3	A0A3M0JW77	Uncharacterized protein.	Sm domain-containing protein.	0.751
DUI87_00045	DUI87_23214	A0A3M0LVL3	A0A3M0K0D4	Uncharacterized protein.	Uncharacterized protein.	0.987
DUI87_00045	DUI87_23953	A0A3M0LVL3	A0A3M0JFX2	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.889
DUI87_00045	DUI87_24057	A0A3M0LVL3	A0A3M0JEW2	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.986
DUI87_00045	DUI87_26741	A0A3M0LVL3	A0A3M0JPC0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.984
DUI87_00045	DUI87_32625	A0A3M0LVL3	A0A3M0IQQ8	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.794
DUI87_00115	DUI87_00045	A0A3M0LFU3	A0A3M0LVL3	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.698
DUI87_00115	DUI87_00712	A0A3M0LFU3	A0A3M0LAG9	Small nuclear ribonucleoprotein Sm D2.	Tudor domain-containing protein.	0.990
DUI87_00115	DUI87_12374	A0A3M0LFU3	A0A3M0KBU2	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.840
DUI87_00115	DUI87_15886	A0A3M0LFU3	A0A3M0JZR7	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.842
DUI87_00115	DUI87_17551	A0A3M0LFU3	A0A3M0JYE3	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
DUI87_00115	DUI87_18527	A0A3M0LFU3	A0A3M0JX46	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999