14 items (Hirundo rustica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_16024	Uncharacterized protein. (691 aa)
	DUI87_20421	Uncharacterized protein. (1120 aa)
	DUI87_19896	Uncharacterized protein. (466 aa)
	DUI87_25320	Uncharacterized protein. (494 aa)
	DUI87_27921	RING-type domain-containing protein. (367 aa)
	DUI87_29874	Uncharacterized protein. (140 aa)
	DUI87_28966	Uncharacterized protein; Belongs to the peptidase C1 family. (327 aa)
	DUI87_04301	Uncharacterized protein. (158 aa)
	DUI87_04548	HP domain-containing protein. (826 aa)
	DUI87_04507	DUF4203 domain-containing protein. (358 aa)
	DUI87_10788	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (2132 aa)
	DUI87_09660	Uncharacterized protein; Belongs to the vasopressin/oxytocin family. (123 aa)
	DUI87_11449	Thioredoxin domain-containing protein. (361 aa)
	DUI87_16830	CARD domain-containing protein. (577 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_04301	DUI87_04507	A0A3M0L3I9	A0A3M0KZ86	Uncharacterized protein.	DUF4203 domain-containing protein.	0.882
DUI87_04301	DUI87_11449	A0A3M0L3I9	A0A3M0KJZ2	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.500
DUI87_04301	DUI87_16830	A0A3M0L3I9	A0A3M0KJJ2	Uncharacterized protein.	CARD domain-containing protein.	0.976
DUI87_04301	DUI87_20421	A0A3M0L3I9	A0A3M0K7X5	Uncharacterized protein.	Uncharacterized protein.	0.947
DUI87_04301	DUI87_25320	A0A3M0L3I9	A0A3M0JC82	Uncharacterized protein.	Uncharacterized protein.	0.989
DUI87_04301	DUI87_27921	A0A3M0L3I9	A0A3M0J407	Uncharacterized protein.	RING-type domain-containing protein.	0.864
DUI87_04301	DUI87_28966	A0A3M0L3I9	A0A3M0IXZ0	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.925
DUI87_04301	DUI87_29874	A0A3M0L3I9	A0A3M0IY30	Uncharacterized protein.	Uncharacterized protein.	0.907
DUI87_04507	DUI87_04301	A0A3M0KZ86	A0A3M0L3I9	DUF4203 domain-containing protein.	Uncharacterized protein.	0.882
DUI87_04507	DUI87_04548	A0A3M0KZ86	A0A3M0KZD0	DUF4203 domain-containing protein.	HP domain-containing protein.	0.556
DUI87_04507	DUI87_16830	A0A3M0KZ86	A0A3M0KJJ2	DUF4203 domain-containing protein.	CARD domain-containing protein.	0.929
DUI87_04507	DUI87_20421	A0A3M0KZ86	A0A3M0K7X5	DUF4203 domain-containing protein.	Uncharacterized protein.	0.966
DUI87_04507	DUI87_25320	A0A3M0KZ86	A0A3M0JC82	DUF4203 domain-containing protein.	Uncharacterized protein.	0.929
DUI87_04507	DUI87_27921	A0A3M0KZ86	A0A3M0J407	DUF4203 domain-containing protein.	RING-type domain-containing protein.	0.929
DUI87_04507	DUI87_29874	A0A3M0KZ86	A0A3M0IY30	DUF4203 domain-containing protein.	Uncharacterized protein.	0.882
DUI87_04548	DUI87_04507	A0A3M0KZD0	A0A3M0KZ86	HP domain-containing protein.	DUF4203 domain-containing protein.	0.556
DUI87_11449	DUI87_04301	A0A3M0KJZ2	A0A3M0L3I9	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.500
DUI87_11449	DUI87_16830	A0A3M0KJZ2	A0A3M0KJJ2	Thioredoxin domain-containing protein.	CARD domain-containing protein.	0.878
DUI87_11449	DUI87_25320	A0A3M0KJZ2	A0A3M0JC82	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.878
DUI87_11449	DUI87_27921	A0A3M0KJZ2	A0A3M0J407	Thioredoxin domain-containing protein.	RING-type domain-containing protein.	0.878