(78 nodes) mRNA transport network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_20690	Integrase-type domain-containing protein. (454 aa)
	DUI87_04915	Uncharacterized protein. (200 aa)
	DUI87_00419	Uncharacterized protein. (428 aa)
	DUI87_00743	MIF4G domain-containing protein. (700 aa)
	DUI87_09010	YTH domain-containing protein. (602 aa)
	DUI87_04241	RRM Nup35-type domain-containing protein. (362 aa)
	DUI87_04213	PCI domain-containing protein. (1780 aa)
	DUI87_05253	2OG-FeII_Oxy_2 domain-containing protein. (378 aa)
	DUI87_06569	Uncharacterized protein. (3567 aa)
	DUI87_09526	Uncharacterized protein. (434 aa)
	DUI87_07804	Uncharacterized protein; Belongs to the WD repeat SEC13 family. (298 aa)
	DUI87_07716	Death domain-containing protein. (573 aa)
	DUI87_06898	Arc_C domain-containing protein. (404 aa)
	DUI87_15439	Importin N-terminal domain-containing protein. (1006 aa)
	DUI87_15276	Uncharacterized protein; Belongs to the DEAD box helicase family. (443 aa)
	DUI87_08700	Uncharacterized protein. (425 aa)
	DUI87_08699	Uncharacterized protein. (88 aa)
	DUI87_08685	Uncharacterized protein; Belongs to the CD36 family. (1084 aa)
	DUI87_10472	WD_REPEATS_REGION domain-containing protein. (332 aa)
	DUI87_10187	KH domain-containing protein. (548 aa)
	DUI87_10243	Uncharacterized protein. (1498 aa)
	DUI87_12483	Uncharacterized protein. (606 aa)
	DUI87_18299	RRM domain-containing protein. (116 aa)
	DUI87_14151	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (756 aa)
	DUI87_12641	Uncharacterized protein. (1022 aa)
	DUI87_12551	Uncharacterized protein. (729 aa)
	DUI87_12769	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (864 aa)
	DUI87_20553	RRM domain-containing protein. (352 aa)
	DUI87_14150	Uncharacterized protein. (136 aa)
	DUI87_16731	Uncharacterized protein. (430 aa)
	DUI87_14954	Uncharacterized protein. (515 aa)
	DUI87_14944	Uncharacterized protein. (153 aa)
	DUI87_14622	Uncharacterized protein. (1275 aa)
	DUI87_14623	Uncharacterized protein. (106 aa)
	DUI87_14598	TPR_MLP1_2 domain-containing protein. (2259 aa)
	DUI87_17595	Uncharacterized protein. (698 aa)
	DUI87_15272	Uncharacterized protein. (183 aa)
	DUI87_17026	Poly [ADP-ribose] polymerase. (354 aa)
	DUI87_16010	PCI domain-containing protein. (364 aa)
	DUI87_16039	Uncharacterized protein. (3359 aa)
	DUI87_18202	Uncharacterized protein. (78 aa)
	DUI87_18310	Uncharacterized protein. (342 aa)
	DUI87_18298	Uncharacterized protein. (511 aa)
	DUI87_25322	Uncharacterized protein. (303 aa)
	DUI87_21122	Eukaryotic translation initiation factor 5A. (153 aa)
	DUI87_25494	Uncharacterized protein. (1262 aa)
	DUI87_21431	Uncharacterized protein. (541 aa)
	DUI87_20214	WD_REPEATS_REGION domain-containing protein. (277 aa)
	DUI87_21284	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
	DUI87_21223	Uncharacterized protein. (246 aa)
	DUI87_19969	RanBD1 domain-containing protein. (557 aa)
	DUI87_21484	RPOL4c domain-containing protein. (142 aa)
	DUI87_21370	TFIIS N-terminal domain-containing protein. (635 aa)
	DUI87_21874	Btz domain-containing protein. (689 aa)
	DUI87_23952	Uncharacterized protein. (772 aa)
	DUI87_24615	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (320 aa)
	DUI87_25248	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
	DUI87_23435	Uncharacterized protein. (197 aa)
	DUI87_30101	Nup214_FG domain-containing protein. (1994 aa)
	DUI87_24152	RRM domain-containing protein. (122 aa)
	DUI87_24516	Uncharacterized protein. (204 aa)
	DUI87_26714	WD_REPEATS_REGION domain-containing protein. (327 aa)
	DUI87_31378	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (691 aa)
	DUI87_25321	Uncharacterized protein. (1001 aa)
	DUI87_25291	NTF2 domain-containing protein. (141 aa)
	DUI87_25268	Uncharacterized protein. (644 aa)
	DUI87_27986	WD_REPEATS_REGION domain-containing protein. (368 aa)
	DUI87_32883	Uncharacterized protein. (957 aa)
	DUI87_31690	Uncharacterized protein. (315 aa)
	DUI87_33080	Uncharacterized protein. (525 aa)
	DUI87_32000	Uncharacterized protein. (479 aa)
	DUI87_31142	SAP domain-containing protein. (266 aa)
	DUI87_31616	Uncharacterized protein. (418 aa)
	DUI87_33005	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (160 aa)
	DUI87_32954	Protein S100; Belongs to the S-100 family. (94 aa)
	DUI87_32955	FoP_duplication domain-containing protein. (168 aa)
	DUI87_34024	Peptidase S59 domain-containing protein. (1790 aa)
	DUI87_35452	Uncharacterized protein. (384 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00419	DUI87_00743	A0A3M0LBD6	A0A3M0LA98	Uncharacterized protein.	MIF4G domain-containing protein.	0.980
DUI87_00419	DUI87_04213	A0A3M0LBD6	A0A3M0KYF8	Uncharacterized protein.	PCI domain-containing protein.	0.910
DUI87_00419	DUI87_04241	A0A3M0LBD6	A0A3M0KYW9	Uncharacterized protein.	RRM Nup35-type domain-containing protein.	0.614
DUI87_00419	DUI87_04915	A0A3M0LBD6	A0A3M0LG04	Uncharacterized protein.	Uncharacterized protein.	0.513
DUI87_00419	DUI87_06569	A0A3M0LBD6	A0A3M0KVA7	Uncharacterized protein.	Uncharacterized protein.	0.646
DUI87_00419	DUI87_07716	A0A3M0LBD6	A0A3M0KQF3	Uncharacterized protein.	Death domain-containing protein.	0.993
DUI87_00419	DUI87_07804	A0A3M0LBD6	A0A3M0KQP5	Uncharacterized protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.608
DUI87_00419	DUI87_08685	A0A3M0LBD6	A0A3M0KK39	Uncharacterized protein.	Uncharacterized protein; Belongs to the CD36 family.	0.677
DUI87_00419	DUI87_10243	A0A3M0LBD6	A0A3M0KHJ3	Uncharacterized protein.	Uncharacterized protein.	0.630
DUI87_00419	DUI87_10472	A0A3M0LBD6	A0A3M0KIU1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.590
DUI87_00419	DUI87_12483	A0A3M0LBD6	A0A3M0KE10	Uncharacterized protein.	Uncharacterized protein.	0.421
DUI87_00419	DUI87_12551	A0A3M0LBD6	A0A3M0KC99	Uncharacterized protein.	Uncharacterized protein.	0.465
DUI87_00419	DUI87_12769	A0A3M0LBD6	A0A3M0K9Y5	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.643
DUI87_00419	DUI87_14150	A0A3M0LBD6	A0A3M0K7H9	Uncharacterized protein.	Uncharacterized protein.	0.495
DUI87_00419	DUI87_14151	A0A3M0LBD6	A0A3M0KD19	Uncharacterized protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.495
DUI87_00419	DUI87_14598	A0A3M0LBD6	A0A3M0K577	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.658
DUI87_00419	DUI87_14622	A0A3M0LBD6	A0A3M0K5J1	Uncharacterized protein.	Uncharacterized protein.	0.881
DUI87_00419	DUI87_14623	A0A3M0LBD6	A0A3M0K5B1	Uncharacterized protein.	Uncharacterized protein.	0.881
DUI87_00419	DUI87_14944	A0A3M0LBD6	A0A3M0K681	Uncharacterized protein.	Uncharacterized protein.	0.991
DUI87_00419	DUI87_15272	A0A3M0LBD6	A0A3M0K3N8	Uncharacterized protein.	Uncharacterized protein.	0.877