93 items (Hirundo rustica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_32643	SEC63 domain-containing protein. (329 aa)
	DUI87_32426	Uncharacterized protein. (697 aa)
	DUI87_32683	Uncharacterized protein. (115 aa)
	DUI87_32414	Matrin-type domain-containing protein. (501 aa)
	DUI87_14944	Uncharacterized protein. (153 aa)
	DUI87_19968	Uncharacterized protein. (274 aa)
	DUI87_14170	Uncharacterized protein. (1169 aa)
	DUI87_14414	Uncharacterized protein. (1233 aa)
	DUI87_13998	G-patch domain-containing protein. (935 aa)
	DUI87_13131	DUF382 domain-containing protein. (147 aa)
	DUI87_13130	Uncharacterized protein. (146 aa)
	DUI87_14841	BTB domain-containing protein. (309 aa)
	DUI87_18922	PPIase cyclophilin-type domain-containing protein. (444 aa)
	DUI87_13360	Uncharacterized protein. (207 aa)
	DUI87_12473	MPN domain-containing protein. (2333 aa)
	DUI87_13132	Uncharacterized protein. (125 aa)
	DUI87_15276	Uncharacterized protein; Belongs to the DEAD box helicase family. (443 aa)
	DUI87_08959	WD_REPEATS_REGION domain-containing protein. (564 aa)
	DUI87_15531	TPR_REGION domain-containing protein. (213 aa)
	DUI87_09132	Uncharacterized protein. (176 aa)
	DUI87_10655	WD_REPEATS_REGION domain-containing protein. (494 aa)
	DUI87_10819	Uncharacterized protein. (639 aa)
	DUI87_13129	Uncharacterized protein. (85 aa)
	DUI87_08310	Protein kinase domain-containing protein. (534 aa)
	DUI87_05287	Uncharacterized protein. (145 aa)
	DUI87_05728	RRM domain-containing protein. (123 aa)
	DUI87_04387	MI domain-containing protein. (828 aa)
	DUI87_08309	Uncharacterized protein. (425 aa)
	DUI87_05727	RRM domain-containing protein. (270 aa)
	DUI87_08714	Uncharacterized protein. (273 aa)
	DUI87_33005	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (160 aa)
	DUI87_32477	Uncharacterized protein. (301 aa)
	DUI87_32139	Uncharacterized protein. (475 aa)
	DUI87_32648	SEC63 domain-containing protein. (271 aa)
	DUI87_31685	WD_REPEATS_REGION domain-containing protein. (372 aa)
	DUI87_31681	WD_REPEATS_REGION domain-containing protein. (1293 aa)
	DUI87_30795	Uncharacterized protein. (330 aa)
	DUI87_32651	Helicase ATP-binding domain-containing protein. (859 aa)
	DUI87_29773	WD_REPEATS_REGION domain-containing protein. (283 aa)
	DUI87_32452	PWI domain-containing protein. (482 aa)
	DUI87_32647	Helicase ATP-binding domain-containing protein. (717 aa)
	DUI87_32448	Uncharacterized protein. (259 aa)
	DUI87_32140	Endo/exonuclease/phosphatase domain-containing protein. (313 aa)
	DUI87_04307	SF3b1 domain-containing protein. (1269 aa)
	DUI87_00252	Uncharacterized protein. (571 aa)
	DUI87_00139	Uncharacterized protein. (472 aa)
	DUI87_00115	Small nuclear ribonucleoprotein Sm D2. (139 aa)
	DUI87_04324	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
	DUI87_28139	Uncharacterized protein. (851 aa)
	DUI87_28299	Uncharacterized protein; Belongs to the DEAD box helicase family. (562 aa)
	DUI87_27901	Uncharacterized protein. (145 aa)
	DUI87_26693	Uncharacterized protein. (617 aa)
	DUI87_24749	SF3A3 domain-containing protein. (150 aa)
	DUI87_26774	Uncharacterized protein. (431 aa)
	DUI87_31007	Uncharacterized protein. (779 aa)
	DUI87_17327	PSP domain-containing protein. (626 aa)
	DUI87_17397	Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (827 aa)
	DUI87_17609	Uncharacterized protein. (752 aa)
	DUI87_15532	Uncharacterized protein. (449 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (115 aa)
	DUI87_23536	Uncharacterized protein. (279 aa)
	DUI87_23011	Uncharacterized protein. (1387 aa)
	DUI87_24050	WD_REPEATS_REGION domain-containing protein. (564 aa)
	DUI87_24138	Uncharacterized protein. (226 aa)
	DUI87_23953	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	DUI87_16871	Uncharacterized protein. (273 aa)
	DUI87_22512	Uncharacterized protein. (698 aa)
	DUI87_17470	Uncharacterized protein. (481 aa)
	DUI87_17450	Uncharacterized protein. (528 aa)
	DUI87_17551	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	DUI87_18527	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (96 aa)
	DUI87_18916	Uncharacterized protein. (643 aa)
	DUI87_20611	Sm domain-containing protein. (91 aa)
	DUI87_19919	Uncharacterized protein. (221 aa)
	DUI87_18871	Uncharacterized protein. (241 aa)
	DUI87_18921	Uncharacterized protein. (258 aa)
	DUI87_21162	Uncharacterized protein; Belongs to the DEAD box helicase family. (407 aa)
	DUI87_25574	Uncharacterized protein. (504 aa)
	DUI87_19941	Uncharacterized protein. (1343 aa)
	DUI87_21489	Uncharacterized protein. (170 aa)
	DUI87_19962	Uncharacterized protein. (294 aa)
	DUI87_22478	Uncharacterized protein. (781 aa)
	DUI87_22042	Tr-type G domain-containing protein. (960 aa)
	DUI87_27900	Uncharacterized protein. (941 aa)
	DUI87_21955	Uncharacterized protein. (1140 aa)
	DUI87_22713	Uncharacterized protein. (555 aa)
	DUI87_22450	Sm domain-containing protein. (115 aa)
	DUI87_23281	SKIP_SNW domain-containing protein. (538 aa)
	DUI87_29062	Uncharacterized protein. (194 aa)
	DUI87_33527	WD_REPEATS_REGION domain-containing protein. (309 aa)
	DUI87_32645	Uncharacterized protein. (600 aa)
	DUI87_33030	Uncharacterized protein. (961 aa)
	DUI87_32625	Small nuclear ribonucleoprotein G. (76 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00115	DUI87_00139	A0A3M0LFU3	A0A3M0LBQ5	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.953
DUI87_00115	DUI87_00252	A0A3M0LFU3	A0A3M0LB63	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.953
DUI87_00115	DUI87_04307	A0A3M0LFU3	A0A3M0L5Z2	Small nuclear ribonucleoprotein Sm D2.	SF3b1 domain-containing protein.	0.993
DUI87_00115	DUI87_04324	A0A3M0LFU3	A0A3M0LH82	Small nuclear ribonucleoprotein Sm D2.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.908
DUI87_00115	DUI87_04387	A0A3M0LFU3	A0A3M0KZ16	Small nuclear ribonucleoprotein Sm D2.	MI domain-containing protein.	0.947
DUI87_00115	DUI87_05287	A0A3M0LFU3	A0A3M0KWT1	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.996
DUI87_00115	DUI87_05727	A0A3M0LFU3	A0A3M0L2A2	Small nuclear ribonucleoprotein Sm D2.	RRM domain-containing protein.	0.978
DUI87_00115	DUI87_05728	A0A3M0LFU3	A0A3M0KWT3	Small nuclear ribonucleoprotein Sm D2.	RRM domain-containing protein.	0.978
DUI87_00115	DUI87_08309	A0A3M0LFU3	A0A3M0KZE1	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.853
DUI87_00115	DUI87_08310	A0A3M0LFU3	A0A3M0KTU4	Small nuclear ribonucleoprotein Sm D2.	Protein kinase domain-containing protein.	0.853
DUI87_00115	DUI87_08714	A0A3M0LFU3	A0A3M0L2U5	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.939
DUI87_00115	DUI87_08959	A0A3M0LFU3	A0A3M0KLD3	Small nuclear ribonucleoprotein Sm D2.	WD_REPEATS_REGION domain-containing protein.	0.934
DUI87_00115	DUI87_09132	A0A3M0LFU3	A0A3M0KLS7	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.854
DUI87_00115	DUI87_10655	A0A3M0LFU3	A0A3M0KPC4	Small nuclear ribonucleoprotein Sm D2.	WD_REPEATS_REGION domain-containing protein.	0.987
DUI87_00115	DUI87_10819	A0A3M0LFU3	A0A3M0KPR2	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.405
DUI87_00115	DUI87_12473	A0A3M0LFU3	A0A3M0KE01	Small nuclear ribonucleoprotein Sm D2.	MPN domain-containing protein.	0.999
DUI87_00115	DUI87_13129	A0A3M0LFU3	A0A3M0KT59	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.961
DUI87_00115	DUI87_13130	A0A3M0LFU3	A0A3M0KB18	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.961
DUI87_00115	DUI87_13131	A0A3M0LFU3	A0A3M0KAW2	Small nuclear ribonucleoprotein Sm D2.	DUF382 domain-containing protein.	0.961
DUI87_00115	DUI87_13132	A0A3M0LFU3	A0A3M0KH97	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.961