(19 nodes) LSM domain superfamily network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_22450	Sm domain-containing protein. (115 aa)
	DUI87_20611	Sm domain-containing protein. (91 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (160 aa)
	DUI87_32394	Sm domain-containing protein. (123 aa)
	DUI87_32625	Small nuclear ribonucleoprotein G. (76 aa)
	DUI87_28404	Uncharacterized protein. (143 aa)
	DUI87_27797	Sm domain-containing protein. (81 aa)
	DUI87_26726	Sm domain-containing protein. (252 aa)
	DUI87_27944	Uncharacterized protein. (302 aa)
	DUI87_26361	GOLD domain-containing protein; Belongs to the EMP24/GP25L family. (313 aa)
	DUI87_26358	Integrase catalytic domain-containing protein. (283 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (115 aa)
	DUI87_23953	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	DUI87_18527	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (96 aa)
	DUI87_17551	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	DUI87_13948	Uncharacterized protein. (399 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	DUI87_08762	Reelin domain-containing protein. (535 aa)
	DUI87_00115	Small nuclear ribonucleoprotein Sm D2. (139 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00115	DUI87_17551	A0A3M0LFU3	A0A3M0JYE3	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
DUI87_00115	DUI87_18527	A0A3M0LFU3	A0A3M0JX46	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
DUI87_00115	DUI87_20611	A0A3M0LFU3	A0A3M0JW77	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
DUI87_00115	DUI87_22450	A0A3M0LFU3	A0A3M0JIF0	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.998
DUI87_00115	DUI87_23953	A0A3M0LFU3	A0A3M0JFX2	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
DUI87_00115	DUI87_26358	A0A3M0LFU3	A0A3M0J846	Small nuclear ribonucleoprotein Sm D2.	Integrase catalytic domain-containing protein.	0.997
DUI87_00115	DUI87_26726	A0A3M0LFU3	A0A3M0J5K5	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.565
DUI87_00115	DUI87_27797	A0A3M0LFU3	A0A3M0J4F1	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.999
DUI87_00115	DUI87_28404	A0A3M0LFU3	A0A3M0J2M2	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.893
DUI87_00115	DUI87_32394	A0A3M0LFU3	A0A3M0IQQ6	Small nuclear ribonucleoprotein Sm D2.	Sm domain-containing protein.	0.998
DUI87_00115	DUI87_32625	A0A3M0LFU3	A0A3M0IQQ8	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
DUI87_00115	LSM3	A0A3M0LFU3	A0A3M0JD74	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
DUI87_00115	LSM4	A0A3M0LFU3	A0A3M0IM19	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
DUI87_00115	LSM8	A0A3M0LFU3	A0A3M0KCC9	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
DUI87_13948	DUI87_22450	A0A3M0K700	A0A3M0JIF0	Uncharacterized protein.	Sm domain-containing protein.	0.454
DUI87_13948	DUI87_26358	A0A3M0K700	A0A3M0J846	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.469
DUI87_13948	DUI87_27944	A0A3M0K700	A0A3M0J657	Uncharacterized protein.	Uncharacterized protein.	0.744
DUI87_13948	DUI87_28404	A0A3M0K700	A0A3M0J2M2	Uncharacterized protein.	Uncharacterized protein.	0.860
DUI87_13948	LSM3	A0A3M0K700	A0A3M0JD74	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.529
DUI87_13948	LSM4	A0A3M0K700	A0A3M0IM19	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.584