16 items (Hirundo rustica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_17443	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (350 aa)
	DUI87_18306	Cytochrome c domain-containing protein. (327 aa)
	DUI87_20421	Uncharacterized protein. (1120 aa)
	DUI87_12619	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (497 aa)
	DUI87_31990	Uncharacterized protein; Belongs to the peptidase C14A family. (417 aa)
	DUI87_25320	Uncharacterized protein. (494 aa)
	DUI87_24094	Uncharacterized protein. (212 aa)
	DUI87_11498	Uncharacterized protein; Belongs to the peptidase C14A family. (321 aa)
	DUI87_11030	CortBP2 domain-containing protein. (625 aa)
	DUI87_09104	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family. (136 aa)
	DUI87_04507	DUF4203 domain-containing protein. (358 aa)
	APIP	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis. (281 aa)
	DUI87_18304	Uncharacterized protein. (498 aa)
	DUI87_23043	Uncharacterized protein. (180 aa)
	DUI87_23042	Uncharacterized protein. (231 aa)
	DUI87_17324	Uncharacterized protein. (236 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APIP	DUI87_04507	A0A3M0JH90	A0A3M0KZ86	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	DUF4203 domain-containing protein.	0.482
APIP	DUI87_09104	A0A3M0JH90	A0A3M0KL96	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family.	0.568
APIP	DUI87_11498	A0A3M0JH90	A0A3M0KDU3	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.546
APIP	DUI87_18306	A0A3M0JH90	A0A3M0K1J1	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	Cytochrome c domain-containing protein.	0.775
APIP	DUI87_20421	A0A3M0JH90	A0A3M0K7X5	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	Uncharacterized protein.	0.993
APIP	DUI87_31990	A0A3M0JH90	A0A3M0IV43	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.804
DUI87_04507	APIP	A0A3M0KZ86	A0A3M0JH90	DUF4203 domain-containing protein.	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	0.482
DUI87_04507	DUI87_09104	A0A3M0KZ86	A0A3M0KL96	DUF4203 domain-containing protein.	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family.	0.709
DUI87_04507	DUI87_11498	A0A3M0KZ86	A0A3M0KDU3	DUF4203 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.709
DUI87_04507	DUI87_17324	A0A3M0KZ86	A0A3M0K039	DUF4203 domain-containing protein.	Uncharacterized protein.	0.640
DUI87_04507	DUI87_18304	A0A3M0KZ86	A0A3M0JVR6	DUF4203 domain-containing protein.	Uncharacterized protein.	0.615
DUI87_04507	DUI87_18306	A0A3M0KZ86	A0A3M0K1J1	DUF4203 domain-containing protein.	Cytochrome c domain-containing protein.	0.860
DUI87_04507	DUI87_20421	A0A3M0KZ86	A0A3M0K7X5	DUF4203 domain-containing protein.	Uncharacterized protein.	0.966
DUI87_04507	DUI87_24094	A0A3M0KZ86	A0A3M0JEV0	DUF4203 domain-containing protein.	Uncharacterized protein.	0.609
DUI87_04507	DUI87_25320	A0A3M0KZ86	A0A3M0JC82	DUF4203 domain-containing protein.	Uncharacterized protein.	0.929
DUI87_04507	DUI87_31990	A0A3M0KZ86	A0A3M0IV43	DUF4203 domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.689
DUI87_09104	APIP	A0A3M0KL96	A0A3M0JH90	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family.	Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Functions in the methionine salvage pathway. May play a role in apoptosis.	0.568
DUI87_09104	DUI87_04507	A0A3M0KL96	A0A3M0KZ86	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family.	DUF4203 domain-containing protein.	0.709
DUI87_09104	DUI87_11498	A0A3M0KL96	A0A3M0KDU3	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.871
DUI87_09104	DUI87_17324	A0A3M0KL96	A0A3M0K039	CASPASE_P10 domain-containing protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.830