(46 nodes) CLEC7A (Dectin-1) signaling network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_15490	Ubiquitin-like domain-containing protein. (156 aa)
	DUI87_04436	Protein kinase domain-containing protein. (443 aa)
	DUI87_10781	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (427 aa)
	DUI87_04435	SAM domain-containing protein. (260 aa)
	DUI87_04330	Uncharacterized protein; Belongs to the peptidase C14A family. (457 aa)
	DUI87_08496	RHD domain-containing protein. (929 aa)
	DUI87_14265	Phosphoinositide phospholipase C. (1197 aa)
	DUI87_09751	Proteasome subunit alpha type. (271 aa)
	DUI87_15499	Uncharacterized protein. (1585 aa)
	DUI87_08866	SER_THR_PHOSPHATASE domain-containing protein. (653 aa)
	DUI87_08871	Uncharacterized protein. (1091 aa)
	DUI87_11735	Uncharacterized protein. (882 aa)
	DUI87_10318	RanBP2-type domain-containing protein. (888 aa)
	DUI87_12395	Uncharacterized protein. (473 aa)
	DUI87_13299	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (672 aa)
	DUI87_15738	RanBP2-type domain-containing protein. (765 aa)
	DUI87_11580	Uncharacterized protein. (519 aa)
	DUI87_11756	Serine/threonine-protein phosphatase. (510 aa)
	DUI87_13149	Uncharacterized protein. (284 aa)
	DUI87_14403	RHD domain-containing protein. (1422 aa)
	DUI87_14121	RHD domain-containing protein. (1056 aa)
	DUI87_14768	CARD domain-containing protein. (140 aa)
	DUI87_21219	RPN1_RPN2_N domain-containing protein. (876 aa)
	DUI87_15322	WD_REPEATS_REGION domain-containing protein. (405 aa)
	DUI87_15324	Uncharacterized protein. (167 aa)
	DUI87_18591	CULLIN_2 domain-containing protein; Belongs to the cullin family. (671 aa)
	DUI87_20353	PPM-type phosphatase domain-containing protein. (530 aa)
	DUI87_21217	RPN2_C domain-containing protein. (337 aa)
	DUI87_23439	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (694 aa)
	DUI87_22057	Protein kinase domain-containing protein. (958 aa)
	DUI87_22473	Uncharacterized protein. (742 aa)
	DUI87_25042	AAA domain-containing protein; Belongs to the AAA ATPase family. (440 aa)
	DUI87_22875	Uncharacterized protein. (473 aa)
	DUI87_25296	ANK_REP_REGION domain-containing protein. (226 aa)
	DUI87_28033	UBIQUITIN_CONJUGAT_2 domain-containing protein. (147 aa)
	DUI87_27943	Proteasome subunit alpha type. (248 aa)
	DUI87_26934	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (220 aa)
	DUI87_26851	Uncharacterized protein; Belongs to the SKP1 family. (165 aa)
	DUI87_29290	Uncharacterized protein. (639 aa)
	DUI87_28022	RHD domain-containing protein. (703 aa)
	DUI87_31039	Uncharacterized protein. (801 aa)
	DUI87_30543	Beta-TrCP_D domain-containing protein. (122 aa)
	DUI87_30540	Uncharacterized protein. (408 aa)
	DUI87_32553	Serine/threonine-protein phosphatase. (499 aa)
	DUI87_33434	Uncharacterized protein. (142 aa)
	DUI87_33829	KxDL domain-containing protein. (176 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_04330	DUI87_04435	A0A3M0KZ73	A0A3M0KZG9	Uncharacterized protein; Belongs to the peptidase C14A family.	SAM domain-containing protein.	0.838
DUI87_04330	DUI87_04436	A0A3M0KZ73	A0A3M0L3V0	Uncharacterized protein; Belongs to the peptidase C14A family.	Protein kinase domain-containing protein.	0.838
DUI87_04330	DUI87_08871	A0A3M0KZ73	A0A3M0KKK3	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.430
DUI87_04330	DUI87_10781	A0A3M0KZ73	A0A3M0L1M6	Uncharacterized protein; Belongs to the peptidase C14A family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.857
DUI87_04330	DUI87_11735	A0A3M0KZ73	A0A3M0KK74	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.430
DUI87_04330	DUI87_12395	A0A3M0KZ73	A0A3M0KHF6	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.476
DUI87_04330	DUI87_13299	A0A3M0KZ73	A0A3M0KGW2	Uncharacterized protein; Belongs to the peptidase C14A family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.414
DUI87_04330	DUI87_14768	A0A3M0KZ73	A0A3M0K5S0	Uncharacterized protein; Belongs to the peptidase C14A family.	CARD domain-containing protein.	0.971
DUI87_04330	DUI87_15490	A0A3M0KZ73	A0A3M0K4K2	Uncharacterized protein; Belongs to the peptidase C14A family.	Ubiquitin-like domain-containing protein.	0.610
DUI87_04330	DUI87_18591	A0A3M0KZ73	A0A3M0JZ22	Uncharacterized protein; Belongs to the peptidase C14A family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.741
DUI87_04330	DUI87_22057	A0A3M0KZ73	A0A3M0JKR6	Uncharacterized protein; Belongs to the peptidase C14A family.	Protein kinase domain-containing protein.	0.658
DUI87_04330	DUI87_22473	A0A3M0KZ73	A0A3M0JIZ7	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.958
DUI87_04330	DUI87_22875	A0A3M0KZ73	A0A3M0JGK1	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.956
DUI87_04330	DUI87_23439	A0A3M0KZ73	A0A3M0JMT4	Uncharacterized protein; Belongs to the peptidase C14A family.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.414
DUI87_04330	DUI87_29290	A0A3M0KZ73	A0A3M0J6R9	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.947
DUI87_04330	DUI87_31039	A0A3M0KZ73	A0A3M0J185	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.960
DUI87_04435	DUI87_04330	A0A3M0KZG9	A0A3M0KZ73	SAM domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.838
DUI87_04435	DUI87_04436	A0A3M0KZG9	A0A3M0L3V0	SAM domain-containing protein.	Protein kinase domain-containing protein.	0.882
DUI87_04435	DUI87_08866	A0A3M0KZG9	A0A3M0KL08	SAM domain-containing protein.	SER_THR_PHOSPHATASE domain-containing protein.	0.406
DUI87_04435	DUI87_08871	A0A3M0KZG9	A0A3M0KKK3	SAM domain-containing protein.	Uncharacterized protein.	0.433