(40 nodes) TNFR2 non-canonical NF-kB pathway network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_30543	Beta-TrCP_D domain-containing protein. (122 aa)
	DUI87_00874	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (275 aa)
	DUI87_05276	TACI-CRD2 domain-containing protein. (242 aa)
	DUI87_08257	TNFR-Cys domain-containing protein. (446 aa)
	DUI87_09751	Proteasome subunit alpha type. (271 aa)
	DUI87_15499	Uncharacterized protein. (1585 aa)
	DUI87_16830	CARD domain-containing protein. (577 aa)
	DUI87_10290	Death domain-containing protein. (213 aa)
	DUI87_12395	Uncharacterized protein. (473 aa)
	DUI87_09947	Uncharacterized protein. (506 aa)
	DUI87_11580	Uncharacterized protein. (519 aa)
	DUI87_17127	Uncharacterized protein. (421 aa)
	DUI87_21219	RPN1_RPN2_N domain-containing protein. (876 aa)
	DUI87_15490	Ubiquitin-like domain-containing protein. (156 aa)
	DUI87_16038	Uncharacterized protein. (588 aa)
	DUI87_16552	Uncharacterized protein. (213 aa)
	DUI87_16182	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (323 aa)
	DUI87_18591	CULLIN_2 domain-containing protein; Belongs to the cullin family. (671 aa)
	DUI87_21217	RPN2_C domain-containing protein. (337 aa)
	DUI87_22057	Protein kinase domain-containing protein. (958 aa)
	DUI87_25042	AAA domain-containing protein; Belongs to the AAA ATPase family. (440 aa)
	DUI87_30275	Uncharacterized protein. (465 aa)
	DUI87_30194	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (282 aa)
	DUI87_25296	ANK_REP_REGION domain-containing protein. (226 aa)
	DUI87_24925	Uncharacterized protein. (480 aa)
	DUI87_27943	Proteasome subunit alpha type. (248 aa)
	DUI87_25699	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (274 aa)
	DUI87_28102	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (148 aa)
	DUI87_26851	Uncharacterized protein; Belongs to the SKP1 family. (165 aa)
	DUI87_27802	TNFR-Cys domain-containing protein. (283 aa)
	DUI87_28103	Uncharacterized protein. (315 aa)
	DUI87_27888	Uncharacterized protein. (282 aa)
	DUI87_27921	RING-type domain-containing protein. (367 aa)
	DUI87_31943	TNFR-Cys domain-containing protein. (379 aa)
	DUI87_30195	TNF_2 domain-containing protein. (239 aa)
	DUI87_03072	Uncharacterized protein; Belongs to the tumor necrosis factor family. (350 aa)
	DUI87_30540	Uncharacterized protein. (408 aa)
	DUI87_31829	TNFR-Cys domain-containing protein. (281 aa)
	DUI87_31925	TNFR-Cys domain-containing protein. (188 aa)
	DUI87_33829	KxDL domain-containing protein. (176 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00874	DUI87_08257	A0A3M0L3M4	A0A3M0KRZ5	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNFR-Cys domain-containing protein.	0.703
DUI87_00874	DUI87_09751	A0A3M0L3M4	A0A3M0KMP0	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Proteasome subunit alpha type.	0.461
DUI87_00874	DUI87_09947	A0A3M0L3M4	A0A3M0KGV4	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.742
DUI87_00874	DUI87_16182	A0A3M0L3M4	A0A3M0K0S3	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.810
DUI87_00874	DUI87_16552	A0A3M0L3M4	A0A3M0K1U9	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.734
DUI87_00874	DUI87_16830	A0A3M0L3M4	A0A3M0KJJ2	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	CARD domain-containing protein.	0.767
DUI87_00874	DUI87_22057	A0A3M0L3M4	A0A3M0JKR6	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Protein kinase domain-containing protein.	0.740
DUI87_00874	DUI87_24925	A0A3M0L3M4	A0A3M0JC17	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.781
DUI87_00874	DUI87_25296	A0A3M0L3M4	A0A3M0JDI4	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	ANK_REP_REGION domain-containing protein.	0.418
DUI87_00874	DUI87_27802	A0A3M0L3M4	A0A3M0J5R8	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNFR-Cys domain-containing protein.	0.990
DUI87_00874	DUI87_27921	A0A3M0L3M4	A0A3M0J407	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	RING-type domain-containing protein.	0.675
DUI87_00874	DUI87_27943	A0A3M0L3M4	A0A3M0JAI4	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Proteasome subunit alpha type.	0.407
DUI87_00874	DUI87_30275	A0A3M0L3M4	A0A3M0JFW7	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.776
DUI87_00874	DUI87_31829	A0A3M0L3M4	A0A3M0IUN4	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNFR-Cys domain-containing protein.	0.952
DUI87_00874	DUI87_31943	A0A3M0L3M4	A0A3M0IYB4	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	TNFR-Cys domain-containing protein.	0.711
DUI87_03072	DUI87_12395	A0A3M0L9Y2	A0A3M0KHF6	Uncharacterized protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.421
DUI87_03072	DUI87_15490	A0A3M0L9Y2	A0A3M0K4K2	Uncharacterized protein; Belongs to the tumor necrosis factor family.	Ubiquitin-like domain-containing protein.	0.500
DUI87_03072	DUI87_16038	A0A3M0L9Y2	A0A3M0K2J2	Uncharacterized protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.809
DUI87_03072	DUI87_28102	A0A3M0L9Y2	A0A3M0J9I6	Uncharacterized protein; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.689
DUI87_05276	DUI87_09947	A0A3M0KWC2	A0A3M0KGV4	TACI-CRD2 domain-containing protein.	Uncharacterized protein.	0.719