(39 nodes) mRNA Capping network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_00743	MIF4G domain-containing protein. (700 aa)
	DUI87_35399	R3H domain-containing protein. (256 aa)
	DUI87_33474	Uncharacterized protein. (952 aa)
	DUI87_33473	Uncharacterized protein. (149 aa)
	DUI87_30531	Uncharacterized protein. (226 aa)
	DUI87_29712	Uncharacterized protein. (1029 aa)
	DUI87_29661	Uncharacterized protein. (315 aa)
	DUI87_29751	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (399 aa)
	DUI87_25248	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
	DUI87_24835	RING-type domain-containing protein. (371 aa)
	DUI87_22636	Uncharacterized protein. (210 aa)
	DUI87_21171	Uncharacterized protein. (170 aa)
	DUI87_21484	RPOL4c domain-containing protein. (142 aa)
	DUI87_21284	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
	DUI87_20322	Uncharacterized protein. (129 aa)
	DUI87_17278	DUF1619 domain-containing protein. (854 aa)
	DUI87_22758	Uncharacterized protein. (565 aa)
	DUI87_16572	TFIIF_beta domain-containing protein. (165 aa)
	DUI87_15280	Uncharacterized protein. (237 aa)
	DUI87_16570	TFIIF_beta_N domain-containing protein. (135 aa)
	DUI87_14231	RPOLD domain-containing protein. (275 aa)
	DUI87_11648	TYR_PHOSPHATASE_2 domain-containing protein. (661 aa)
	DUI87_12533	Uncharacterized protein. (245 aa)
	DUI87_10799	TYR_PHOSPHATASE_2 domain-containing protein. (695 aa)
	DUI87_10416	Uncharacterized protein. (101 aa)
	DUI87_07811	mRNA cap 0 methyltransferase domain-containing protein. (437 aa)
	DUI87_04579	Uncharacterized protein. (810 aa)
	DUI87_08808	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (1145 aa)
	DUI87_00148	RNA_pol_Rpb1_1 domain-containing protein. (196 aa)
	DUI87_00151	Uncharacterized protein. (364 aa)
	DUI87_00294	Uncharacterized protein. (453 aa)
	DUI87_00091	Uncharacterized protein. (591 aa)
	DUI87_00149	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (382 aa)
	DUI87_00092	Uncharacterized protein. (412 aa)
	DUI87_00150	Uncharacterized protein. (1243 aa)
	DUI87_00090	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1156 aa)
	DUI87_04946	Cyclin_C_2 domain-containing protein. (235 aa)
	DUI87_00017	Uncharacterized protein. (1015 aa)
	DUI87_00711	VWFA domain-containing protein. (365 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00017	DUI87_00090	A0A3M0LJG8	A0A3M0LFW3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.942
DUI87_00017	DUI87_00091	A0A3M0LJG8	A0A3M0LC18	Uncharacterized protein.	Uncharacterized protein.	0.942
DUI87_00017	DUI87_00092	A0A3M0LJG8	A0A3M0LCY9	Uncharacterized protein.	Uncharacterized protein.	0.942
DUI87_00017	DUI87_00148	A0A3M0LJG8	A0A3M0LB61	Uncharacterized protein.	RNA_pol_Rpb1_1 domain-containing protein.	0.942
DUI87_00017	DUI87_00149	A0A3M0LJG8	A0A3M0LC35	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.942
DUI87_00017	DUI87_00150	A0A3M0LJG8	A0A3M0LFQ1	Uncharacterized protein.	Uncharacterized protein.	0.941
DUI87_00017	DUI87_00151	A0A3M0LJG8	A0A3M0LBV9	Uncharacterized protein.	Uncharacterized protein.	0.942
DUI87_00017	DUI87_00294	A0A3M0LJG8	A0A3M0LC02	Uncharacterized protein.	Uncharacterized protein.	0.941
DUI87_00017	DUI87_00743	A0A3M0LJG8	A0A3M0LA98	Uncharacterized protein.	MIF4G domain-containing protein.	0.809
DUI87_00017	DUI87_04579	A0A3M0LJG8	A0A3M0KZW1	Uncharacterized protein.	Uncharacterized protein.	0.759
DUI87_00017	DUI87_04946	A0A3M0LJG8	A0A3M0LG38	Uncharacterized protein.	Cyclin_C_2 domain-containing protein.	0.849
DUI87_00017	DUI87_07811	A0A3M0LJG8	A0A3M0KQQ8	Uncharacterized protein.	mRNA cap 0 methyltransferase domain-containing protein.	0.957
DUI87_00017	DUI87_08808	A0A3M0LJG8	A0A3M0L313	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.984
DUI87_00017	DUI87_10416	A0A3M0LJG8	A0A3M0KJS1	Uncharacterized protein.	Uncharacterized protein.	0.775
DUI87_00017	DUI87_10799	A0A3M0LJG8	A0A3M0KJP0	Uncharacterized protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.975
DUI87_00017	DUI87_11648	A0A3M0LJG8	A0A3M0KE55	Uncharacterized protein.	TYR_PHOSPHATASE_2 domain-containing protein.	0.944
DUI87_00017	DUI87_12533	A0A3M0LJG8	A0A3M0KE62	Uncharacterized protein.	Uncharacterized protein.	0.961
DUI87_00017	DUI87_14231	A0A3M0LJG8	A0A3M0K7Q5	Uncharacterized protein.	RPOLD domain-containing protein.	0.981
DUI87_00017	DUI87_16570	A0A3M0LJG8	A0A3M0K740	Uncharacterized protein.	TFIIF_beta_N domain-containing protein.	0.960
DUI87_00017	DUI87_16572	A0A3M0LJG8	A0A3M0K1W5	Uncharacterized protein.	TFIIF_beta domain-containing protein.	0.960