(60 nodes) mRNA Splicing - Minor Pathway network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_31966	CSD_1 domain-containing protein. (354 aa)
	DUI87_32645	Uncharacterized protein. (600 aa)
	DUI87_33030	Uncharacterized protein. (961 aa)
	DUI87_32625	Small nuclear ribonucleoprotein G. (76 aa)
	DUI87_32643	SEC63 domain-containing protein. (329 aa)
	DUI87_32648	SEC63 domain-containing protein. (271 aa)
	DUI87_31685	WD_REPEATS_REGION domain-containing protein. (372 aa)
	DUI87_31681	WD_REPEATS_REGION domain-containing protein. (1293 aa)
	DUI87_31323	RRM domain-containing protein. (121 aa)
	DUI87_32998	Uncharacterized protein. (244 aa)
	DUI87_32651	Helicase ATP-binding domain-containing protein. (859 aa)
	DUI87_32647	Helicase ATP-binding domain-containing protein. (717 aa)
	DUI87_28744	Uncharacterized protein. (1139 aa)
	DUI87_27901	Uncharacterized protein. (145 aa)
	DUI87_29751	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (399 aa)
	DUI87_00151	Uncharacterized protein. (364 aa)
	DUI87_00090	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1156 aa)
	DUI87_00091	Uncharacterized protein. (591 aa)
	DUI87_00149	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (382 aa)
	DUI87_00092	Uncharacterized protein. (412 aa)
	DUI87_00150	Uncharacterized protein. (1243 aa)
	DUI87_00115	Small nuclear ribonucleoprotein Sm D2. (139 aa)
	DUI87_00148	RNA_pol_Rpb1_1 domain-containing protein. (196 aa)
	DUI87_00743	MIF4G domain-containing protein. (700 aa)
	DUI87_04307	SF3b1 domain-containing protein. (1269 aa)
	DUI87_08808	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (1145 aa)
	DUI87_05727	RRM domain-containing protein. (270 aa)
	DUI87_05481	Ubiquitin-like domain-containing protein. (229 aa)
	DUI87_05728	RRM domain-containing protein. (123 aa)
	DUI87_13129	Uncharacterized protein. (85 aa)
	DUI87_08504	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	DUI87_08091	Uncharacterized protein. (257 aa)
	DUI87_10343	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	DUI87_13132	Uncharacterized protein. (125 aa)
	DUI87_12862	Uncharacterized protein. (216 aa)
	DUI87_12473	MPN domain-containing protein. (2333 aa)
	DUI87_12317	Uncharacterized protein. (263 aa)
	DUI87_13130	Uncharacterized protein. (146 aa)
	DUI87_13131	DUF382 domain-containing protein. (147 aa)
	DUI87_14231	RPOLD domain-containing protein. (275 aa)
	DUI87_14170	Uncharacterized protein. (1169 aa)
	DUI87_16570	TFIIF_beta_N domain-containing protein. (135 aa)
	DUI87_15272	Uncharacterized protein. (183 aa)
	DUI87_16572	TFIIF_beta domain-containing protein. (165 aa)
	DUI87_17284	RRM domain-containing protein. (265 aa)
	DUI87_15856	C3H1-type domain-containing protein. (269 aa)
	DUI87_17600	C3H1-type domain-containing protein. (142 aa)
	DUI87_17551	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	DUI87_18527	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (96 aa)
	DUI87_20611	Sm domain-containing protein. (91 aa)
	DUI87_20322	Uncharacterized protein. (129 aa)
	DUI87_20158	CSD_1 domain-containing protein. (187 aa)
	DUI87_21284	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (157 aa)
	DUI87_21484	RPOL4c domain-containing protein. (142 aa)
	DUI87_22042	Tr-type G domain-containing protein. (960 aa)
	DUI87_21171	Uncharacterized protein. (170 aa)
	DUI87_27900	Uncharacterized protein. (941 aa)
	DUI87_22636	Uncharacterized protein. (210 aa)
	DUI87_25248	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
	DUI87_23953	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00090	DUI87_00091	A0A3M0LFW3	A0A3M0LC18	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.940
DUI87_00090	DUI87_00092	A0A3M0LFW3	A0A3M0LCY9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.916
DUI87_00090	DUI87_00115	A0A3M0LFW3	A0A3M0LFU3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Small nuclear ribonucleoprotein Sm D2.	0.850
DUI87_00090	DUI87_00151	A0A3M0LFW3	A0A3M0LBV9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.693
DUI87_00090	DUI87_00743	A0A3M0LFW3	A0A3M0LA98	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	MIF4G domain-containing protein.	0.775
DUI87_00090	DUI87_08808	A0A3M0LFW3	A0A3M0L313	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.979
DUI87_00090	DUI87_12317	A0A3M0LFW3	A0A3M0KBM7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.743
DUI87_00090	DUI87_12473	A0A3M0LFW3	A0A3M0KE01	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	MPN domain-containing protein.	0.503
DUI87_00090	DUI87_14231	A0A3M0LFW3	A0A3M0K7Q5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.972
DUI87_00090	DUI87_16570	A0A3M0LFW3	A0A3M0K740	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TFIIF_beta_N domain-containing protein.	0.947
DUI87_00090	DUI87_16572	A0A3M0LFW3	A0A3M0K1W5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TFIIF_beta domain-containing protein.	0.947
DUI87_00090	DUI87_17284	A0A3M0LFW3	A0A3M0K000	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RRM domain-containing protein.	0.831
DUI87_00090	DUI87_17551	A0A3M0LFW3	A0A3M0JYE3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Small nuclear ribonucleoprotein Sm D3.	0.864
DUI87_00090	DUI87_18527	A0A3M0LFW3	A0A3M0JX46	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.855
DUI87_00090	DUI87_20158	A0A3M0LFW3	A0A3M0JQF4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CSD_1 domain-containing protein.	0.556
DUI87_00090	DUI87_20322	A0A3M0LFW3	A0A3M0JQM2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.966
DUI87_00090	DUI87_20611	A0A3M0LFW3	A0A3M0JW77	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Sm domain-containing protein.	0.851
DUI87_00090	DUI87_21171	A0A3M0LFW3	A0A3M0JMA9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.966
DUI87_00090	DUI87_21284	A0A3M0LFW3	A0A3M0JPB3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.699
DUI87_00090	DUI87_21484	A0A3M0LFW3	A0A3M0JMX4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.966