(50 nodes) Glycine, serine and threonine metabolism network (Hirundo rustica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DUI87_09566	Uncharacterized protein. (468 aa)
	DUI87_11806	ACT domain-containing protein. (510 aa)
	DUI87_12425	DAO domain-containing protein. (392 aa)
	DUI87_11601	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (268 aa)
	DUI87_14258	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (164 aa)
	DUI87_11522	Uncharacterized protein; Belongs to the peptidase M24B family. (666 aa)
	DUI87_12498	Uncharacterized protein. (253 aa)
	DUI87_12461	Uncharacterized protein. (314 aa)
	DUI87_18869	Hcy-binding domain-containing protein. (405 aa)
	DUI87_14551	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (530 aa)
	DUI87_13135	Uncharacterized protein. (437 aa)
	DUI87_12881	PNPLA domain-containing protein. (545 aa)
	DUI87_12861	Uncharacterized protein. (335 aa)
	DUI87_13930	Peptidase_M24 domain-containing protein; Belongs to the peptidase M24B family. (220 aa)
	DUI87_13933	AMP_N domain-containing protein. (202 aa)
	DUI87_13931	Peptidase_M24 domain-containing protein. (210 aa)
	DUI87_19906	Uncharacterized protein. (264 aa)
	DUI87_15120	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (305 aa)
	DUI87_17485	PALP domain-containing protein. (327 aa)
	DUI87_17367	DAO domain-containing protein. (345 aa)
	DUI87_15235	Glycine N-methyltransferase. (294 aa)
	DUI87_15664	Amine oxidase. (642 aa)
	DUI87_15629	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (1189 aa)
	DUI87_15663	Amine oxidase. (521 aa)
	DUI87_18057	Thr_synth_N domain-containing protein. (716 aa)
	DUI87_18868	Uncharacterized protein. (864 aa)
	DUI87_21943	Amine oxidase. (774 aa)
	DUI87_20392	AMP_N domain-containing protein. (507 aa)
	DUI87_20315	Aminotran_1_2 domain-containing protein. (421 aa)
	DUI87_21474	Aminotran_5 domain-containing protein. (341 aa)
	DUI87_21944	Amine oxidase. (704 aa)
	DUI87_22378	Aldedh domain-containing protein. (467 aa)
	DUI87_22649	RMT2 domain-containing protein. (237 aa)
	DUI87_25102	Uncharacterized protein; Belongs to the peptidase M24B family. (619 aa)
	DUI87_23414	5-aminolevulinate synthase. (635 aa)
	DUI87_23410	Uncharacterized protein. (484 aa)
	DUI87_23478	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family. (355 aa)
	DUI87_27987	Uncharacterized protein. (210 aa)
	DUI87_33292	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (449 aa)
	DUI87_29169	Uncharacterized protein. (422 aa)
	DUI87_28187	Beta_elim_lyase domain-containing protein. (286 aa)
	DUI87_29733	D-ser_dehydrat domain-containing protein. (361 aa)
	DUI87_32337	Myotubularin phosphatase domain-containing protein. (493 aa)
	DUI87_05644	Epimerase domain-containing protein. (373 aa)
	DUI87_05643	Myotubularin phosphatase domain-containing protein. (550 aa)
	DUI87_05247	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (482 aa)
	DUI87_08075	RAP domain-containing protein. (533 aa)
	DUI87_08505	Uncharacterized protein. (888 aa)
	DUI87_06547	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (430 aa)
	DUI87_04061	Beta_elim_lyase domain-containing protein. (797 aa)

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_04061	DUI87_05247	A0A3M0L8W8	A0A3M0KWP3	Beta_elim_lyase domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.993
DUI87_04061	DUI87_06547	A0A3M0L8W8	A0A3M0L0T0	Beta_elim_lyase domain-containing protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.967
DUI87_04061	DUI87_08505	A0A3M0L8W8	A0A3M0KZY6	Beta_elim_lyase domain-containing protein.	Uncharacterized protein.	0.897
DUI87_04061	DUI87_09566	A0A3M0L8W8	A0A3M0KUM0	Beta_elim_lyase domain-containing protein.	Uncharacterized protein.	0.424
DUI87_04061	DUI87_12425	A0A3M0L8W8	A0A3M0KHI6	Beta_elim_lyase domain-containing protein.	DAO domain-containing protein.	0.953
DUI87_04061	DUI87_12498	A0A3M0L8W8	A0A3M0KC53	Beta_elim_lyase domain-containing protein.	Uncharacterized protein.	0.549
DUI87_04061	DUI87_13135	A0A3M0L8W8	A0A3M0KAV4	Beta_elim_lyase domain-containing protein.	Uncharacterized protein.	0.975
DUI87_04061	DUI87_14258	A0A3M0L8W8	A0A3M0KDX2	Beta_elim_lyase domain-containing protein.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.999
DUI87_04061	DUI87_14551	A0A3M0L8W8	A0A3M0KB77	Beta_elim_lyase domain-containing protein.	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.849
DUI87_04061	DUI87_15120	A0A3M0L8W8	A0A3M0K4C2	Beta_elim_lyase domain-containing protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.897
DUI87_04061	DUI87_15235	A0A3M0L8W8	A0A3M0K3L8	Beta_elim_lyase domain-containing protein.	Glycine N-methyltransferase.	0.939
DUI87_04061	DUI87_15629	A0A3M0L8W8	A0A3M0JZ39	Beta_elim_lyase domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.571
DUI87_04061	DUI87_17367	A0A3M0L8W8	A0A3M0K3M0	Beta_elim_lyase domain-containing protein.	DAO domain-containing protein.	0.949
DUI87_04061	DUI87_17485	A0A3M0L8W8	A0A3M0K4B8	Beta_elim_lyase domain-containing protein.	PALP domain-containing protein.	0.428
DUI87_04061	DUI87_18057	A0A3M0L8W8	A0A3M0JV51	Beta_elim_lyase domain-containing protein.	Thr_synth_N domain-containing protein.	0.424
DUI87_04061	DUI87_18868	A0A3M0L8W8	A0A3M0JTQ8	Beta_elim_lyase domain-containing protein.	Uncharacterized protein.	0.990
DUI87_04061	DUI87_18869	A0A3M0L8W8	A0A3M0KB81	Beta_elim_lyase domain-containing protein.	Hcy-binding domain-containing protein.	0.914
DUI87_04061	DUI87_20315	A0A3M0L8W8	A0A3M0JQ19	Beta_elim_lyase domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.957
DUI87_04061	DUI87_21474	A0A3M0L8W8	A0A3M0JMW1	Beta_elim_lyase domain-containing protein.	Aminotran_5 domain-containing protein.	0.968
DUI87_04061	DUI87_22378	A0A3M0L8W8	A0A3M0JJ21	Beta_elim_lyase domain-containing protein.	Aldedh domain-containing protein.	0.663