(36 nodes) Small-subunit processome, and snoRNA binding network (Fusarium verticillioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1066 aa)
	FVEG_00659	WD_REPEATS_REGION domain-containing protein. (962 aa)
	FVEG_02646	Brix domain-containing protein. (298 aa)
	FVEG_00311	WD_REPEATS_REGION domain-containing protein. (879 aa)
	FVEG_02756	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (731 aa)
	FVEG_02998	U3 small nucleolar ribonucleoprotein IMP3. (183 aa)
	FVEG_00943	WD_REPEATS_REGION domain-containing protein. (581 aa)
	FVEG_03558	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (264 aa)
	FVEG_14980	NUC153 domain-containing protein. (385 aa)
	FVEG_00827	CBF domain-containing protein. (549 aa)
	FVEG_02714	WD_REPEATS_REGION domain-containing protein. (528 aa)
	FVEG_01045	DRIM domain-containing protein. (2642 aa)
	FVEG_01229	18S rRNA biogenesis protein RCL1. (404 aa)
	FVEG_02953	Uncharacterized protein. (313 aa)
	FVEG_06170	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (320 aa)
	FVEG_06200	Uncharacterized protein. (485 aa)
	FVEG_02314	Uncharacterized protein. (535 aa)
	FVEG_06407	Bms1-type G domain-containing protein. (1145 aa)
	FVEG_05015	U3 small nucleolar RNA-associated protein 22. (1105 aa)
	FVEG_05200	WD_REPEATS_REGION domain-containing protein. (909 aa)
	FVEG_05318	BP28CT domain-containing protein. (1807 aa)
	FVEG_07893	Periodic tryptophan protein 2. (894 aa)
	FVEG_08204	Uncharacterized protein. (902 aa)
	FVEG_06065	Uncharacterized protein. (1042 aa)
	FVEG_06274	Uncharacterized protein. (362 aa)
	FVEG_04707	Uncharacterized protein. (396 aa)
	FVEG_09141	Uncharacterized protein. (1802 aa)
	FVEG_06942	Sas10 domain-containing protein. (616 aa)
	FVEG_05090	Ribosomal RNA small subunit methyltransferase NEP1. (259 aa)
	FVEG_05184	WD_REPEATS_REGION domain-containing protein. (582 aa)
	FVEG_08120	WD_REPEATS_REGION domain-containing protein. (960 aa)
	FVEG_11238	Utp12 domain-containing protein. (389 aa)
	FVEG_11587	Nop domain-containing protein. (567 aa)
	FVEG_09528	WD_REPEATS_REGION domain-containing protein. (445 aa)
	FVEG_07956	PINc domain-containing protein. (198 aa)
	FVEG_11259	WD_REPEATS_REGION domain-containing protein. (552 aa)

Your Current Organism:

Fusarium verticillioides

NCBI taxonomy Id: 334819
Other names: F. verticillioides 7600, Fusarium verticillioides 7600, Gibberella moniliformis 7600

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FVEG_00311	FVEG_00659	W7LL46	W7LAZ3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
FVEG_00311	FVEG_00827	W7LL46	W7LWV3	WD_REPEATS_REGION domain-containing protein.	CBF domain-containing protein.	0.999
FVEG_00311	FVEG_00943	W7LL46	W7LP97	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
FVEG_00311	FVEG_01045	W7LL46	W7LY14	WD_REPEATS_REGION domain-containing protein.	DRIM domain-containing protein.	0.998
FVEG_00311	FVEG_01229	W7LL46	W7LYM0	WD_REPEATS_REGION domain-containing protein.	18S rRNA biogenesis protein RCL1.	0.997
FVEG_00311	FVEG_02314	W7LL46	W7M3R3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
FVEG_00311	FVEG_02646	W7LL46	W7LL28	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.998
FVEG_00311	FVEG_02714	W7LL46	W7LXN9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
FVEG_00311	FVEG_02756	W7LL46	W7LLM1	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.999
FVEG_00311	FVEG_02953	W7LL46	W7LYY5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
FVEG_00311	FVEG_02998	W7LL46	W7LMT5	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar ribonucleoprotein IMP3.	0.990
FVEG_00311	FVEG_03558	W7LL46	W7LSA6	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.994
FVEG_00311	FVEG_04707	W7LL46	W7ME71	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
FVEG_00311	FVEG_05015	W7LL46	W7M7N9	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.999
FVEG_00311	FVEG_05090	W7LL46	W7MG33	WD_REPEATS_REGION domain-containing protein.	Ribosomal RNA small subunit methyltransferase NEP1.	0.997
FVEG_00311	FVEG_05184	W7LL46	W7MGN2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
FVEG_00311	FVEG_05200	W7LL46	W7M8T2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
FVEG_00311	FVEG_05318	W7LL46	W7M999	WD_REPEATS_REGION domain-containing protein.	BP28CT domain-containing protein.	0.999
FVEG_00311	FVEG_06065	W7LL46	W7MC19	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
FVEG_00311	FVEG_06170	W7LL46	W7M189	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998