(13 nodes) Preribosome, small subunit precursor, and Endonucleolytic cleavage to generate mature 5-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) network (Fusarium verticillioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FVEG_03558	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (264 aa)
	FVEG_00827	CBF domain-containing protein. (549 aa)
	FVEG_01045	DRIM domain-containing protein. (2642 aa)
	FVEG_06170	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (320 aa)
	FVEG_06200	Uncharacterized protein. (485 aa)
	FVEG_06407	Bms1-type G domain-containing protein. (1145 aa)
	FVEG_08204	Uncharacterized protein. (902 aa)
	FVEG_09141	Uncharacterized protein. (1802 aa)
	FVEG_06942	Sas10 domain-containing protein. (616 aa)
	FVEG_05090	Ribosomal RNA small subunit methyltransferase NEP1. (259 aa)
	FVEG_09528	WD_REPEATS_REGION domain-containing protein. (445 aa)
	FVEG_07956	PINc domain-containing protein. (198 aa)
	FVEG_11259	WD_REPEATS_REGION domain-containing protein. (552 aa)

Your Current Organism:

Fusarium verticillioides

NCBI taxonomy Id: 334819
Other names: F. verticillioides 7600, Fusarium verticillioides 7600, Gibberella moniliformis 7600

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FVEG_00827	FVEG_01045	W7LWV3	W7LY14	CBF domain-containing protein.	DRIM domain-containing protein.	0.999
FVEG_00827	FVEG_03558	W7LWV3	W7LSA6	CBF domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
FVEG_00827	FVEG_05090	W7LWV3	W7MG33	CBF domain-containing protein.	Ribosomal RNA small subunit methyltransferase NEP1.	0.999
FVEG_00827	FVEG_06170	W7LWV3	W7M189	CBF domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
FVEG_00827	FVEG_06200	W7LWV3	W7M1D5	CBF domain-containing protein.	Uncharacterized protein.	0.999
FVEG_00827	FVEG_06407	W7LWV3	W7M419	CBF domain-containing protein.	Bms1-type G domain-containing protein.	0.994
FVEG_00827	FVEG_06942	W7LWV3	W7MG13	CBF domain-containing protein.	Sas10 domain-containing protein.	0.999
FVEG_00827	FVEG_07956	W7LWV3	W7MUF0	CBF domain-containing protein.	PINc domain-containing protein.	0.997
FVEG_00827	FVEG_08204	W7LWV3	W7MBS0	CBF domain-containing protein.	Uncharacterized protein.	0.999
FVEG_00827	FVEG_09141	W7LWV3	W7MFE6	CBF domain-containing protein.	Uncharacterized protein.	0.999
FVEG_00827	FVEG_09528	W7LWV3	W7MRJ2	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
FVEG_00827	FVEG_11259	W7LWV3	W7MXL9	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
FVEG_01045	FVEG_00827	W7LY14	W7LWV3	DRIM domain-containing protein.	CBF domain-containing protein.	0.999
FVEG_01045	FVEG_03558	W7LY14	W7LSA6	DRIM domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
FVEG_01045	FVEG_05090	W7LY14	W7MG33	DRIM domain-containing protein.	Ribosomal RNA small subunit methyltransferase NEP1.	0.997
FVEG_01045	FVEG_06170	W7LY14	W7M189	DRIM domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
FVEG_01045	FVEG_06200	W7LY14	W7M1D5	DRIM domain-containing protein.	Uncharacterized protein.	0.996
FVEG_01045	FVEG_06407	W7LY14	W7M419	DRIM domain-containing protein.	Bms1-type G domain-containing protein.	0.999
FVEG_01045	FVEG_06942	W7LY14	W7MG13	DRIM domain-containing protein.	Sas10 domain-containing protein.	0.998
FVEG_01045	FVEG_07956	W7LY14	W7MUF0	DRIM domain-containing protein.	PINc domain-containing protein.	0.998