(53 nodes) Mostly uncharacterized, incl. Regulation of ion transmembrane transport, and SH3 domain network (Fusarium verticillioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FVEG_00454	HMG box domain-containing protein. (354 aa)
	FVEG_00388	Uncharacterized protein. (400 aa)
	FVEG_01107	Uncharacterized protein. (473 aa)
	FVEG_02126	Atx10homo_assoc domain-containing protein. (1004 aa)
	FVEG_00739	TAF4 domain-containing protein. (643 aa)
	FVEG_00859	Uncharacterized protein. (414 aa)
	FVEG_00991	Protein kinase domain-containing protein. (575 aa)
	FVEG_03010	Uncharacterized protein. (202 aa)
	FVEG_01303	Zn(2)-C6 fungal-type domain-containing protein. (491 aa)
	FVEG_01431	Uncharacterized protein. (708 aa)
	FVEG_04793	Uncharacterized protein. (281 aa)
	FVEG_00574	Zn(2)-C6 fungal-type domain-containing protein. (816 aa)
	FVEG_15102	Uncharacterized protein. (128 aa)
	FVEG_01248	Methyltransf_11 domain-containing protein. (987 aa)
	FVEG_02803	Uncharacterized protein. (1701 aa)
	FVEG_15277	Uncharacterized protein. (308 aa)
	FVEG_03779	Uncharacterized protein. (791 aa)
	FVEG_02192	Uncharacterized protein. (234 aa)
	FVEG_06961	Uncharacterized protein. (301 aa)
	FVEG_06789	ANK_REP_REGION domain-containing protein. (1844 aa)
	FVEG_07408	Uncharacterized protein. (371 aa)
	FVEG_04958	Uncharacterized protein. (463 aa)
	FVEG_03605	Uncharacterized protein. (136 aa)
	FVEG_08224	Iwr1 domain-containing protein. (433 aa)
	FVEG_08988	DUF4604 domain-containing protein. (165 aa)
	FVEG_06472	Uncharacterized protein. (488 aa)
	FVEG_09237	Uncharacterized protein. (361 aa)
	FVEG_06682	Zn(2)-C6 fungal-type domain-containing protein. (707 aa)
	FVEG_04876	Uncharacterized protein. (363 aa)
	FVEG_10159	Uncharacterized protein. (574 aa)
	FVEG_05330	Uncharacterized protein. (492 aa)
	FVEG_07365	Uncharacterized protein. (69 aa)
	FVEG_07463	Uncharacterized protein. (110 aa)
	FVEG_07504	Uncharacterized protein. (947 aa)
	FVEG_16790	Zn(2)-C6 fungal-type domain-containing protein. (689 aa)
	FVEG_08005	NDT80 domain-containing protein. (662 aa)
	FVEG_08167	DUF4048 domain-containing protein. (641 aa)
	FVEG_08154	Uncharacterized protein. (345 aa)
	FVEG_06324	Uncharacterized protein. (412 aa)
	FVEG_06372	SH3 domain-containing protein. (865 aa)
	FVEG_09054	Myb_DNA-bind_3 domain-containing protein. (411 aa)
	FVEG_09456	Uncharacterized protein. (111 aa)
	FVEG_09693	Uncharacterized protein. (477 aa)
	FVEG_09731	Uncharacterized protein. (1325 aa)
	FVEG_10196	Histone transcription regulator 3. (2054 aa)
	FVEG_13010	SH3 domain-containing protein. (765 aa)
	FVEG_10387	Uncharacterized protein. (335 aa)
	FVEG_08205	Uncharacterized protein. (332 aa)
	FVEG_11237	Uncharacterized protein. (1407 aa)
	FVEG_08962	Uncharacterized protein. (667 aa)
	FVEG_09559	Uncharacterized protein. (780 aa)
	FVEG_11331	DUF4050 domain-containing protein. (586 aa)
	FVEG_11686	Uncharacterized protein. (672 aa)

Your Current Organism:

Fusarium verticillioides

NCBI taxonomy Id: 334819
Other names: F. verticillioides 7600, Fusarium verticillioides 7600, Gibberella moniliformis 7600

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FVEG_00388	FVEG_00574	W7LCK0	W7LVQ9	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.421
FVEG_00388	FVEG_01107	W7LCK0	W7LG23	Uncharacterized protein.	Uncharacterized protein.	0.487
FVEG_00388	FVEG_04876	W7LCK0	W7MF47	Uncharacterized protein.	Uncharacterized protein.	0.497
FVEG_00388	FVEG_09054	W7LCK0	W7MPN5	Uncharacterized protein.	Myb_DNA-bind_3 domain-containing protein.	0.417
FVEG_00388	FVEG_09693	W7LCK0	W7MRX5	Uncharacterized protein.	Uncharacterized protein.	0.528
FVEG_00388	FVEG_15277	W7LCK0	W7M1A7	Uncharacterized protein.	Uncharacterized protein.	0.486
FVEG_00388	FVEG_16790	W7LCK0	W7MJ87	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.405
FVEG_00454	FVEG_00859	W7L9Y5	W7LNU2	HMG box domain-containing protein.	Uncharacterized protein.	0.434
FVEG_00454	FVEG_02126	W7L9Y5	W7LIJ1	HMG box domain-containing protein.	Atx10homo_assoc domain-containing protein.	0.426
FVEG_00454	FVEG_02803	W7L9Y5	W7LYR5	HMG box domain-containing protein.	Uncharacterized protein.	0.418
FVEG_00454	FVEG_08205	W7L9Y5	W7MVI7	HMG box domain-containing protein.	Uncharacterized protein.	0.425
FVEG_00454	FVEG_09559	W7L9Y5	W7N0K9	HMG box domain-containing protein.	Uncharacterized protein.	0.402
FVEG_00454	FVEG_10196	W7L9Y5	W7MTT7	HMG box domain-containing protein.	Histone transcription regulator 3.	0.468
FVEG_00454	FVEG_15277	W7L9Y5	W7M1A7	HMG box domain-containing protein.	Uncharacterized protein.	0.438
FVEG_00574	FVEG_00388	W7LVQ9	W7LCK0	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.421
FVEG_00574	FVEG_00991	W7LVQ9	W7LPI6	Zn(2)-C6 fungal-type domain-containing protein.	Protein kinase domain-containing protein.	0.402
FVEG_00574	FVEG_01107	W7LVQ9	W7LG23	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.416
FVEG_00574	FVEG_04876	W7LVQ9	W7MF47	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.505
FVEG_00574	FVEG_09054	W7LVQ9	W7MPN5	Zn(2)-C6 fungal-type domain-containing protein.	Myb_DNA-bind_3 domain-containing protein.	0.438
FVEG_00574	FVEG_09693	W7LVQ9	W7MRX5	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.477