(22 nodes) Organic acid binding network (Fusarium verticillioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FVEG_13639	Alanyl-tRNA synthetase. (270 aa)
	FVEG_12564	Aminotran_1_2 domain-containing protein. (371 aa)
	FVEG_11021	Aminotran_1_2 domain-containing protein. (365 aa)
	FVEG_09869	Uncharacterized protein. (155 aa)
	FVEG_06633	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (168 aa)
	FVEG_08305	P4Hc domain-containing protein. (287 aa)
	FVEG_07745	Uncharacterized protein. (270 aa)
	FVEG_08754	Zn(2)-C6 fungal-type domain-containing protein. (509 aa)
	FVEG_08755	Uncharacterized protein. (352 aa)
	FVEG_08303	Fe2OG dioxygenase domain-containing protein. (228 aa)
	FVEG_04963	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (484 aa)
	FVEG_16006	P4Hc domain-containing protein. (303 aa)
	FVEG_02337	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (1049 aa)
	FVEG_01053	Fe2OG dioxygenase domain-containing protein. (644 aa)
	FVEG_04951	Ornithine carbamoyltransferase, mitochondrial; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (352 aa)
	FVEG_02339	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (503 aa)
	FVEG_14961	P4Hc domain-containing protein. (248 aa)
	FVEG_04203	Protein pyrABCN. (2255 aa)
	FVEG_01143	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (488 aa)
	ALA1	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (1097 aa)
	FVEG_02585	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (518 aa)
	FVEG_02338	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (209 aa)

Your Current Organism:

Fusarium verticillioides

NCBI taxonomy Id: 334819
Other names: F. verticillioides 7600, Fusarium verticillioides 7600, Gibberella moniliformis 7600

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FVEG_01143	FVEG_02337	W7LQ21	W7M3V6	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.670
FVEG_01143	FVEG_02338	W7LQ21	W7LJJ9	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.712
FVEG_01143	FVEG_02339	W7LQ21	W7LVX0	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.490
FVEG_01143	FVEG_02585	W7LQ21	W7LKR4	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.490
FVEG_01143	FVEG_04963	W7LQ21	W7M7V9	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.490
FVEG_01143	FVEG_06633	W7LQ21	W7MMZ9	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.712
FVEG_02337	FVEG_01143	W7M3V6	W7LQ21	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.670
FVEG_02337	FVEG_02338	W7M3V6	W7LJJ9	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.998
FVEG_02337	FVEG_02339	W7M3V6	W7LVX0	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.985
FVEG_02337	FVEG_02585	W7M3V6	W7LKR4	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.985
FVEG_02337	FVEG_04963	W7M3V6	W7M7V9	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.985
FVEG_02337	FVEG_06633	W7M3V6	W7MMZ9	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.998
FVEG_02338	FVEG_01143	W7LJJ9	W7LQ21	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.712
FVEG_02338	FVEG_02337	W7LJJ9	W7M3V6	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.998
FVEG_02338	FVEG_02339	W7LJJ9	W7LVX0	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.975
FVEG_02338	FVEG_02585	W7LJJ9	W7LKR4	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.975
FVEG_02338	FVEG_04951	W7LJJ9	W7LWA8	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Ornithine carbamoyltransferase, mitochondrial; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.407
FVEG_02338	FVEG_04963	W7LJJ9	W7M7V9	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.975
FVEG_02338	FVEG_06633	W7LJJ9	W7MMZ9	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.905
FVEG_02339	FVEG_01143	W7LVX0	W7LQ21	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.490