(35 nodes) 90S preribosome network (Fusarium verticillioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FVEG_02953	Uncharacterized protein. (313 aa)
	FVEG_01464	CBF domain-containing protein. (998 aa)
	FVEG_06121	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (500 aa)
	FVEG_03519	Pectate lyase. (224 aa)
	FVEG_02314	Uncharacterized protein. (535 aa)
	FVEG_02603	RING-type domain-containing protein. (644 aa)
	FVEG_07858	Uncharacterized protein. (314 aa)
	FVEG_05279	ATP-dependent RNA helicase DBP8; Belongs to the DEAD box helicase family. (539 aa)
	FVEG_07893	Periodic tryptophan protein 2. (894 aa)
	FVEG_04707	Uncharacterized protein. (396 aa)
	FVEG_16251	F-box domain-containing protein. (810 aa)
	FVEG_08120	WD_REPEATS_REGION domain-containing protein. (960 aa)
	FVEG_11313	RNA helicase. (589 aa)
	FVEG_11238	Utp12 domain-containing protein. (389 aa)
	FVEG_11271	RRM domain-containing protein. (369 aa)
	FVEG_11394	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	FVEG_12434	Pectate lyase. (233 aa)
	FVEG_12477	Fungal_trans domain-containing protein. (518 aa)
	FVEG_11576	RNA helicase. (635 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1066 aa)
	FVEG_00633	ATP-dependent RNA helicase ROK1. (692 aa)
	FVEG_02646	Brix domain-containing protein. (298 aa)
	FVEG_00350	Uncharacterized protein. (778 aa)
	FVEG_02756	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (731 aa)
	FVEG_02998	U3 small nucleolar ribonucleoprotein IMP3. (183 aa)
	FVEG_00943	WD_REPEATS_REGION domain-containing protein. (581 aa)
	FVEG_14980	NUC153 domain-containing protein. (385 aa)
	FVEG_02295	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (341 aa)
	FVEG_02315	Zn(2)-C6 fungal-type domain-containing protein. (959 aa)
	FVEG_02439	Uncharacterized protein. (248 aa)
	FVEG_02446	RRM domain-containing protein. (324 aa)
	FVEG_00827	CBF domain-containing protein. (549 aa)
	FVEG_05159	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (313 aa)
	FVEG_01229	18S rRNA biogenesis protein RCL1. (404 aa)
	FVEG_08204	Uncharacterized protein. (902 aa)

Your Current Organism:

Fusarium verticillioides

NCBI taxonomy Id: 334819
Other names: F. verticillioides 7600, Fusarium verticillioides 7600, Gibberella moniliformis 7600

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FVEG_00350	FVEG_00633	W7LL36	W7LAW2	Uncharacterized protein.	ATP-dependent RNA helicase ROK1.	0.703
FVEG_00350	FVEG_00827	W7LL36	W7LWV3	Uncharacterized protein.	CBF domain-containing protein.	0.897
FVEG_00350	FVEG_00943	W7LL36	W7LP97	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.863
FVEG_00350	FVEG_01229	W7LL36	W7LYM0	Uncharacterized protein.	18S rRNA biogenesis protein RCL1.	0.881
FVEG_00350	FVEG_01464	W7LL36	W7LZW4	Uncharacterized protein.	CBF domain-containing protein.	0.998
FVEG_00350	FVEG_02314	W7LL36	W7M3R3	Uncharacterized protein.	Uncharacterized protein.	0.775
FVEG_00350	FVEG_02439	W7LL36	W7LWB0	Uncharacterized protein.	Uncharacterized protein.	0.416
FVEG_00350	FVEG_02446	W7LL36	W7LWC0	Uncharacterized protein.	RRM domain-containing protein.	0.660
FVEG_00350	FVEG_02646	W7LL36	W7LL28	Uncharacterized protein.	Brix domain-containing protein.	0.916
FVEG_00350	FVEG_02756	W7LL36	W7LLM1	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.898
FVEG_00350	FVEG_02953	W7LL36	W7LYY5	Uncharacterized protein.	Uncharacterized protein.	0.562
FVEG_00350	FVEG_02998	W7LL36	W7LMT5	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein IMP3.	0.673
FVEG_00350	FVEG_03519	W7LL36	W7M1N7	Uncharacterized protein.	Pectate lyase.	0.769
FVEG_00350	FVEG_04707	W7LL36	W7ME71	Uncharacterized protein.	Uncharacterized protein.	0.842
FVEG_00350	FVEG_05159	W7LL36	W7LXA2	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.919
FVEG_00350	FVEG_05279	W7LL36	W7M9J3	Uncharacterized protein.	ATP-dependent RNA helicase DBP8; Belongs to the DEAD box helicase family.	0.629
FVEG_00350	FVEG_06121	W7LL36	W7M106	Uncharacterized protein.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.861
FVEG_00350	FVEG_07893	W7LL36	W7MAA4	Uncharacterized protein.	Periodic tryptophan protein 2.	0.944
FVEG_00350	FVEG_08120	W7LL36	W7ML70	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.952
FVEG_00350	FVEG_08204	W7LL36	W7MBS0	Uncharacterized protein.	Uncharacterized protein.	0.936