(12 nodes) Preribosome, small subunit precursor network (Fusarium verticillioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FVEG_00827	CBF domain-containing protein. (549 aa)
	FVEG_11271	RRM domain-containing protein. (369 aa)
	FVEG_11260	Bms1-type G domain-containing protein. (816 aa)
	FVEG_06398	Atypical/RIO/RIO2 protein kinase. (406 aa)
	FVEG_08215	Uncharacterized protein. (343 aa)
	FVEG_08142	Uncharacterized protein. (766 aa)
	FVEG_10205	Uncharacterized protein. (239 aa)
	FVEG_08204	Uncharacterized protein. (902 aa)
	FVEG_07967	Uncharacterized protein. (408 aa)
	FVEG_05996	Uncharacterized protein. (186 aa)
	FVEG_06200	Uncharacterized protein. (485 aa)
	FVEG_01045	DRIM domain-containing protein. (2642 aa)

Your Current Organism:

Fusarium verticillioides

NCBI taxonomy Id: 334819
Other names: F. verticillioides 7600, Fusarium verticillioides 7600, Gibberella moniliformis 7600

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FVEG_00827	FVEG_01045	W7LWV3	W7LY14	CBF domain-containing protein.	DRIM domain-containing protein.	0.999
FVEG_00827	FVEG_06200	W7LWV3	W7M1D5	CBF domain-containing protein.	Uncharacterized protein.	0.999
FVEG_00827	FVEG_06398	W7LWV3	W7MM39	CBF domain-containing protein.	Atypical/RIO/RIO2 protein kinase.	0.695
FVEG_00827	FVEG_07967	W7LWV3	W7MAJ1	CBF domain-containing protein.	Uncharacterized protein.	0.811
FVEG_00827	FVEG_08142	W7LWV3	W7MKM0	CBF domain-containing protein.	Uncharacterized protein.	0.428
FVEG_00827	FVEG_08204	W7LWV3	W7MBS0	CBF domain-containing protein.	Uncharacterized protein.	0.999
FVEG_00827	FVEG_10205	W7LWV3	W7MJC1	CBF domain-containing protein.	Uncharacterized protein.	0.865
FVEG_00827	FVEG_11260	W7LWV3	W7MN85	CBF domain-containing protein.	Bms1-type G domain-containing protein.	0.789
FVEG_00827	FVEG_11271	W7LWV3	W7MN98	CBF domain-containing protein.	RRM domain-containing protein.	0.729
FVEG_01045	FVEG_00827	W7LY14	W7LWV3	DRIM domain-containing protein.	CBF domain-containing protein.	0.999
FVEG_01045	FVEG_06200	W7LY14	W7M1D5	DRIM domain-containing protein.	Uncharacterized protein.	0.996
FVEG_01045	FVEG_07967	W7LY14	W7MAJ1	DRIM domain-containing protein.	Uncharacterized protein.	0.475
FVEG_01045	FVEG_08204	W7LY14	W7MBS0	DRIM domain-containing protein.	Uncharacterized protein.	0.999
FVEG_01045	FVEG_10205	W7LY14	W7MJC1	DRIM domain-containing protein.	Uncharacterized protein.	0.517
FVEG_01045	FVEG_11260	W7LY14	W7MN85	DRIM domain-containing protein.	Bms1-type G domain-containing protein.	0.657
FVEG_01045	FVEG_11271	W7LY14	W7MN98	DRIM domain-containing protein.	RRM domain-containing protein.	0.662
FVEG_06200	FVEG_00827	W7M1D5	W7LWV3	Uncharacterized protein.	CBF domain-containing protein.	0.999
FVEG_06200	FVEG_01045	W7M1D5	W7LY14	Uncharacterized protein.	DRIM domain-containing protein.	0.996
FVEG_06200	FVEG_06398	W7M1D5	W7MM39	Uncharacterized protein.	Atypical/RIO/RIO2 protein kinase.	0.996
FVEG_06200	FVEG_07967	W7M1D5	W7MAJ1	Uncharacterized protein.	Uncharacterized protein.	0.999