(18 nodes) Small-subunit processome network (Fusarium verticillioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FVEG_02697	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (719 aa)
	FVEG_07956	PINc domain-containing protein. (198 aa)
	FVEG_11259	WD_REPEATS_REGION domain-containing protein. (552 aa)
	FVEG_09564	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (257 aa)
	FVEG_09528	WD_REPEATS_REGION domain-containing protein. (445 aa)
	FVEG_08963	Uncharacterized protein. (903 aa)
	FVEG_05184	WD_REPEATS_REGION domain-containing protein. (582 aa)
	FVEG_06942	Sas10 domain-containing protein. (616 aa)
	FVEG_09141	Uncharacterized protein. (1802 aa)
	FVEG_06793	RNA helicase. (795 aa)
	FVEG_04735	Uncharacterized protein. (1211 aa)
	FVEG_02314	Uncharacterized protein. (535 aa)
	FVEG_06170	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (320 aa)
	FVEG_01045	DRIM domain-containing protein. (2642 aa)
	FVEG_03558	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (264 aa)
	FVEG_00896	Uncharacterized protein. (287 aa)
	FVEG_01872	Uncharacterized protein. (885 aa)
	FVEG_00659	WD_REPEATS_REGION domain-containing protein. (962 aa)

Your Current Organism:

Fusarium verticillioides

NCBI taxonomy Id: 334819
Other names: F. verticillioides 7600, Fusarium verticillioides 7600, Gibberella moniliformis 7600

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FVEG_00659	FVEG_01045	W7LAZ3	W7LY14	WD_REPEATS_REGION domain-containing protein.	DRIM domain-containing protein.	0.999
FVEG_00659	FVEG_01872	W7LAZ3	W7LH36	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.994
FVEG_00659	FVEG_02314	W7LAZ3	W7M3R3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.993
FVEG_00659	FVEG_02697	W7LAZ3	W7LXL5	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.852
FVEG_00659	FVEG_03558	W7LAZ3	W7LSA6	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.987
FVEG_00659	FVEG_04735	W7LAZ3	W7M6C4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.919
FVEG_00659	FVEG_05184	W7LAZ3	W7MGN2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
FVEG_00659	FVEG_06170	W7LAZ3	W7M189	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
FVEG_00659	FVEG_06793	W7LAZ3	W7MFA1	WD_REPEATS_REGION domain-containing protein.	RNA helicase.	0.705
FVEG_00659	FVEG_06942	W7LAZ3	W7MG13	WD_REPEATS_REGION domain-containing protein.	Sas10 domain-containing protein.	0.993
FVEG_00659	FVEG_07956	W7LAZ3	W7MUF0	WD_REPEATS_REGION domain-containing protein.	PINc domain-containing protein.	0.982
FVEG_00659	FVEG_08963	W7LAZ3	W7MNV2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.623
FVEG_00659	FVEG_09141	W7LAZ3	W7MFE6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
FVEG_00659	FVEG_09528	W7LAZ3	W7MRJ2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996
FVEG_00659	FVEG_09564	W7LAZ3	W7MRN0	WD_REPEATS_REGION domain-containing protein.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.658
FVEG_00659	FVEG_11259	W7LAZ3	W7MXL9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
FVEG_00896	FVEG_01045	W7LNV7	W7LY14	Uncharacterized protein.	DRIM domain-containing protein.	0.562
FVEG_00896	FVEG_01872	W7LNV7	W7LH36	Uncharacterized protein.	Uncharacterized protein.	0.966
FVEG_00896	FVEG_02314	W7LNV7	W7M3R3	Uncharacterized protein.	Uncharacterized protein.	0.798
FVEG_00896	FVEG_02697	W7LNV7	W7LXL5	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.753