(28 nodes) Mixed, incl. DNA modification, and Rescue of stalled ribosome network (Syntrophomonas wolfei Goettingen)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Swol_0512	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit). (489 aa)
	Swol_0513	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant. (153 aa)
	Swol_0514	KEGG: tte:TTE1075 hypothetical protein. (548 aa)
	Swol_0515	KEGG: eba:p2A50 type I restriction-modification system (specificity subunit). (263 aa)
	Swol_0516	KEGG: gka:GK0346 type I restriction-modification system R subunit (endonuclease). (1115 aa)
	Swol_0990	KEGG: mma:MM0154 hypothetical protein. (1199 aa)
	Swol_0991	KEGG: gsu:GSU2107 hypothetical protein. (300 aa)
	Swol_0994	Hypothetical protein; KEGG: chy:CHY_2653 putative restriction enzyme. (309 aa)
	Swol_0997	KEGG: mac:MA2372 hypothetical protein. (706 aa)
	Swol_0998	KEGG: eli:ELI_14750 hypothetical protein. (746 aa)
	Swol_0999	KEGG: mhu:Mhun_1906 ATP-dependent protease La. (679 aa)
	Swol_1275	KEGG: tte:TTE1517 predicted RNA-binding protein homologous to eukaryotic snRNP. (601 aa)
	Swol_2072	KEGG: ddi:DDB0168508 hypothetical protein. (221 aa)
	Swol_2253	KEGG: hch:HCH_03413 subtilisin-like serine protease. (823 aa)
	Swol_2254	KEGG: hch:HCH_03415 ATPase of the AAA+ class. (321 aa)
	Swol_2255	KEGG: sat:SYN_02061 zinc metalloprotease. (227 aa)
	Swol_2256	Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1061 aa)
	Swol_2257	Restriction endonuclease S subunits-like protein; KEGG: mja:MJ1218 type I restriction-modification enzyme, S subunit, putative. (413 aa)
	Swol_2258	KEGG: chy:CHY_0830 type I restriction-modification system, M subunit. (891 aa)
	Swol_2488	KEGG: chy:CHY_2651 ATP-dependent Lon protease. (678 aa)
	Swol_2489	KEGG: chy:CHY_2652 hypothetical protein. (873 aa)
	Swol_2491	KEGG: dsy:DSY0677 hypothetical protein. (106 aa)
	Swol_2492	Putative transcriptional regulator; KEGG: psp:PSPPH_0105 carbon storage regulator related protein. (92 aa)
	Swol_2493	KEGG: mma:MM0156 type IIS restriction enzyme. (1183 aa)
	Swol_2494	KEGG: chy:CHY_2654 hypothetical protein. (1185 aa)
	Swol_2495	KEGG: chy:CHY_2655 hypothetical protein. (188 aa)
	Swol_2496	KEGG: dsy:DSY0675 hypothetical protein. (199 aa)
	Swol_2506	KEGG: pol:Bpro_5027 type II restriction enzyme. (72 aa)

Your Current Organism:

Syntrophomonas wolfei Goettingen

NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Swol_0512	Swol_0513	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	0.986
Swol_0512	Swol_0514	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).	KEGG: tte:TTE1075 hypothetical protein.	0.581
Swol_0512	Swol_0515	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).	KEGG: eba:p2A50 type I restriction-modification system (specificity subunit).	0.991
Swol_0512	Swol_0516	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).	KEGG: gka:GK0346 type I restriction-modification system R subunit (endonuclease).	0.935
Swol_0512	Swol_2256	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).	Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.896
Swol_0512	Swol_2257	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).	Restriction endonuclease S subunits-like protein; KEGG: mja:MJ1218 type I restriction-modification enzyme, S subunit, putative.	0.917
Swol_0513	Swol_0512	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).	0.986
Swol_0513	Swol_0514	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: tte:TTE1075 hypothetical protein.	0.581
Swol_0513	Swol_0515	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: eba:p2A50 type I restriction-modification system (specificity subunit).	0.932
Swol_0513	Swol_0516	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: gka:GK0346 type I restriction-modification system R subunit (endonuclease).	0.909
Swol_0513	Swol_0991	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: gsu:GSU2107 hypothetical protein.	0.803
Swol_0513	Swol_0994	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	Hypothetical protein; KEGG: chy:CHY_2653 putative restriction enzyme.	0.803
Swol_0513	Swol_0997	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: mac:MA2372 hypothetical protein.	0.803
Swol_0513	Swol_2256	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.743
Swol_0513	Swol_2258	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: chy:CHY_0830 type I restriction-modification system, M subunit.	0.894
Swol_0513	Swol_2491	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: dsy:DSY0677 hypothetical protein.	0.803
Swol_0513	Swol_2492	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	Putative transcriptional regulator; KEGG: psp:PSPPH_0105 carbon storage regulator related protein.	0.488
Swol_0513	Swol_2506	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	KEGG: pol:Bpro_5027 type II restriction enzyme.	0.803
Swol_0514	Swol_0512	KEGG: tte:TTE1075 hypothetical protein.	KEGG: gka:GK0343 type I restriction modification system M subunit (site-specific DNA-methyltransferase subunit).	0.581
Swol_0514	Swol_0513	KEGG: tte:TTE1075 hypothetical protein.	Hypothetical protein; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant.	0.581

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