STRINGSTRING
Swol_0307 Swol_0307 Swol_0308 Swol_0308 Swol_0435 Swol_0435 Swol_0650 Swol_0650 Swol_0675 Swol_0675 Swol_0789 Swol_0789 Swol_0790 Swol_0790 Swol_0791 Swol_0791 Swol_1483 Swol_1483 Swol_1484 Swol_1484 Swol_1485 Swol_1485 Swol_1486 Swol_1486 Swol_1933 Swol_1933 Swol_1934 Swol_1934 Swol_1935 Swol_1935 Swol_1936 Swol_1936 Swol_2030 Swol_2030 Swol_2031 Swol_2031
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swol_0307KEGG: ctc:CTC02423 3-hydroxybutyryl-CoA dehydrogenase. (282 aa)
Swol_0308Acetyl-CoA C-acetyltransferase; KEGG: gme:Gmet_2213 thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Swol_0435KEGG: chy:CHY_1603 3-hydroxybutyryl-CoA dehydrogenase. (207 aa)
Swol_0650KEGG: ctc:CTC02427 putative crotonase; Belongs to the enoyl-CoA hydratase/isomerase family. (252 aa)
Swol_0675Acetyl-CoA C-acetyltransferase; KEGG: gme:Gmet_2213 thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Swol_0789Acetyl-CoA C-acetyltransferase; KEGG: gme:Gmet_2213 thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
Swol_0790KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase. (260 aa)
Swol_0791KEGG: ctc:CTC02423 3-hydroxybutyryl-CoA dehydrogenase. (282 aa)
Swol_1483butyryl-CoA dehydrogenase; KEGG: dsy:DSY1568 hypothetical protein. (382 aa)
Swol_1484Short chain enoyl-CoA hydratase; KEGG: cpe:CPE2301 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
Swol_1485KEGG: chy:CHY_1603 3-hydroxybutyryl-CoA dehydrogenase. (284 aa)
Swol_1486Acetyl-CoA C-acetyltransferase; KEGG: dsy:DSY1567 hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. (451 aa)
Swol_1933Conserved hypothetical protein; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Catalyzes the oxidation of butanoyl-CoA to crotonyl-CoA. Probably passes the electrons released by this reaction on to electron-transfer flavoproteins (EtfAB) to finally generate hydrogen and/or formate. (610 aa)
Swol_1934acetyl-CoA acetyltransferase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the beta- keto thiolysis of acetoacetyl-CoA, leading to 2 acetyl-CoA molecules. (396 aa)
Swol_19353-hydroxyacyl-CoA dehydrogenase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the oxidation of 3-hydroxybutyryl-CoA to acetoacetyl-CoA. Belongs to the 3-hydroxyacyl-CoA dehydrogenase family. (279 aa)
Swol_1936Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA. (260 aa)
Swol_2030KEGG: cac:CAC2708 3-hydroxybutyryl-CoA dehydrogenase. (284 aa)
Swol_2031Short chain enoyl-CoA hydratase; KEGG: cpe:CPE2301 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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