STRINGSTRING
Swol_0489 Swol_0489 Swol_0612 Swol_0612 Swol_0820 Swol_0820 murE murE murF murF mraY mraY murD murD murG murG murC murC murA murA Swol_0886 Swol_0886 Swol_0909 Swol_0909 Swol_0921 Swol_0921 Swol_0966 Swol_0966 Swol_0967 Swol_0967 murB murB Swol_1109 Swol_1109 ddl ddl uppP uppP Swol_1563 Swol_1563 Swol_1638 Swol_1638 murA-2 murA-2 Swol_2417 Swol_2417 murA-3 murA-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swol_0489Peptidoglycan glycosyltransferase; KEGG: tte:TTE1258 cell division protein FtsI/penicillin-binding protein 2. (568 aa)
Swol_0612Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: dsy:DSY2305 hypothetical protein; Belongs to the peptidase S11 family. (381 aa)
Swol_0820Peptidoglycan glycosyltransferase; KEGG: mta:Moth_0837 stage V sporulation protein D. (705 aa)
murEUDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (489 aa)
murFUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (466 aa)
mraYPhospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (324 aa)
murDUDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (453 aa)
murGUndecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (367 aa)
murCUDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (465 aa)
murAUDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (416 aa)
Swol_0886Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (257 aa)
Swol_0909KEGG: mta:Moth_1058 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family. (373 aa)
Swol_0921KEGG: gka:GK3406 penicillin-binding protein. (649 aa)
Swol_0966KEGG: dsy:DSY4019 hypothetical protein. (464 aa)
Swol_0967KEGG: tte:TTE0007 predicted glutamine amidotransferase. (243 aa)
murBUDP-N-acetylmuramate dehydrogenase; Cell wall formation. (299 aa)
Swol_1109Peptidoglycan glycosyltransferase; KEGG: mta:Moth_1710 penicillin-binding protein 1A. (795 aa)
ddlD-alanine--D-alanine ligase; Cell wall formation. (309 aa)
uppPUndecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (260 aa)
Swol_1563Undecaprenol kinase; KEGG: bca:BCE4382 diacylglycerol kinase. (126 aa)
Swol_1638KEGG: mta:Moth_0540 peptidoglycan glycosyltransferase. (703 aa)
murA-2UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (414 aa)
Swol_2417KEGG: mta:Moth_2408 methicillin resistance protein. (366 aa)
murA-3UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (419 aa)
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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