STRINGSTRING
Swol_0036 Swol_0036 Swol_0037 Swol_0037 Swol_0307 Swol_0307 Swol_0308 Swol_0308 Swol_0309 Swol_0309 Swol_0435 Swol_0435 Swol_0436 Swol_0436 Swol_0650 Swol_0650 Swol_0675 Swol_0675 Swol_0787 Swol_0787 Swol_0789 Swol_0789 Swol_0790 Swol_0790 Swol_0791 Swol_0791 Swol_1014 Swol_1014 Swol_1048 Swol_1048 Swol_1099 Swol_1099 Swol_1145 Swol_1145 Swol_1147 Swol_1147 Swol_1171 Swol_1171 Swol_1241 Swol_1241 Swol_1242 Swol_1242 Swol_1355 Swol_1355 Swol_1356 Swol_1356 Swol_1374 Swol_1374 Swol_1375 Swol_1375 Swol_1376 Swol_1376 Swol_1377 Swol_1377 Swol_1399 Swol_1399 Swol_1400 Swol_1400 Swol_1481 Swol_1481 Swol_1484 Swol_1484 Swol_1485 Swol_1485 Swol_1486 Swol_1486 Swol_1735 Swol_1735 Swol_1744 Swol_1744 Swol_1932 Swol_1932 Swol_1934 Swol_1934 Swol_1935 Swol_1935 Swol_1936 Swol_1936 Swol_2030 Swol_2030 Swol_2031 Swol_2031 Swol_2051 Swol_2051 Swol_2128 Swol_2128 Swol_2145 Swol_2145 Swol_2146 Swol_2146 Swol_2234 Swol_2234 Swol_2235 Swol_2235 Swol_2236 Swol_2236 Swol_2237 Swol_2237 Swol_2566 Swol_2566
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Swol_0036KEGG: chy:CHY_0043 putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit. (362 aa)
Swol_0037KEGG: chy:CHY_0044 putative keto/oxoacid ferredoxin oxidoreductase, beta subunit. (251 aa)
Swol_0307KEGG: ctc:CTC02423 3-hydroxybutyryl-CoA dehydrogenase. (282 aa)
Swol_0308Acetyl-CoA C-acetyltransferase; KEGG: gme:Gmet_2213 thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Swol_0309KEGG: rfr:Rfer_2267 acetyl-CoA hydrolase/transferase. (447 aa)
Swol_0435KEGG: chy:CHY_1603 3-hydroxybutyryl-CoA dehydrogenase. (207 aa)
Swol_0436KEGG: pca:Pcar_2447 4-hydroxybutyrate coenzyme A transferase. (446 aa)
Swol_0650KEGG: ctc:CTC02427 putative crotonase; Belongs to the enoyl-CoA hydratase/isomerase family. (252 aa)
Swol_0675Acetyl-CoA C-acetyltransferase; KEGG: gme:Gmet_2213 thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (402 aa)
Swol_0787KEGG: dsy:DSY1711 hypothetical protein. (447 aa)
Swol_0789Acetyl-CoA C-acetyltransferase; KEGG: gme:Gmet_2213 thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
Swol_0790KEGG: tte:TTE0544 Enoyl-CoA hydratase/carnithine racemase. (260 aa)
Swol_0791KEGG: ctc:CTC02423 3-hydroxybutyryl-CoA dehydrogenase. (282 aa)
Swol_1014KEGG: dsy:DSY1711 hypothetical protein. (447 aa)
Swol_1048KEGG: bcz:BCZK0420 formate C-acetyltransferase (formate acetyltransferase) (pyruvate formate-lyase). (742 aa)
Swol_1099KEGG: btk:BT9727_1208 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. (368 aa)
Swol_1145KEGG: bja:bll4548 hypothetical protein. (375 aa)
Swol_1147KEGG: dsy:DSY1711 hypothetical protein. (449 aa)
Swol_1171KEGG: tte:TTE0548 3-Hydroxyacyl-CoA dehydrogenase. (283 aa)
Swol_1241KEGG: btk:BT9727_1208 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. (363 aa)
Swol_1242KEGG: tte:TTE0551 predicted acyl dehydratase. (142 aa)
Swol_1355KEGG: tte:TTE0551 predicted acyl dehydratase. (142 aa)
Swol_1356KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain. (141 aa)
Swol_1374KEGG: ctc:CTC02525 pyruvate synthase subunit porB. (312 aa)
Swol_1375Pyruvate ferredoxin oxidoreductase, alpha subunit; KEGG: ctc:CTC02526 pyruvate synthase subunit porA. (397 aa)
Swol_1376Pyruvate ferredoxin oxidoreductase, delta subunit; KEGG: ctc:CTC02527 pyruvate synthase subunit porD. (102 aa)
Swol_1377Pyruvate ferredoxin oxidoreductase, gamma subunit; KEGG: ctc:CTC02528 pyruvate synthase subunit porC. (194 aa)
Swol_1399KEGG: chy:CHY_0576 putative keto/oxoacid ferredoxin oxidoreductase, beta subunit. (247 aa)
Swol_1400KEGG: tma:TM1759 2-oxoisovalerate ferredoxin oxidoreductase, alpha subunit. (352 aa)
Swol_1481Glutaconate CoA-transferase; KEGG: gme:Gmet_1708 coenzyme A transferase. (271 aa)
Swol_1484Short chain enoyl-CoA hydratase; KEGG: cpe:CPE2301 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
Swol_1485KEGG: chy:CHY_1603 3-hydroxybutyryl-CoA dehydrogenase. (284 aa)
Swol_1486Acetyl-CoA C-acetyltransferase; KEGG: dsy:DSY1567 hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family. (451 aa)
Swol_1735KEGG: tte:TTE0554 acetyl-CoA hydrolase. (431 aa)
Swol_1744KEGG: gme:Gmet_2054 acetyl-CoA hydrolase/transferase. (444 aa)
Swol_1932Conserved hypothetical protein; Coenzyme A-transferase that converts butyrate to butyryl-CoA. Involved in the syntrophic growth of S.wolfei on butyrate in cooperation with methanogens or an appropriate hydrogen-scavenging bacterium, as part of the butyrate oxidation pathway. (447 aa)
Swol_1934acetyl-CoA acetyltransferase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the beta- keto thiolysis of acetoacetyl-CoA, leading to 2 acetyl-CoA molecules. (396 aa)
Swol_19353-hydroxyacyl-CoA dehydrogenase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the oxidation of 3-hydroxybutyryl-CoA to acetoacetyl-CoA. Belongs to the 3-hydroxyacyl-CoA dehydrogenase family. (279 aa)
Swol_1936Short chain enoyl-CoA hydratase; Involved in syntrophic growth of S.wolfei with butyrate, as part of the butyrate oxidation pathway. Probably catalyzes the hydration of crotonyl-CoA to 3-hydroxybutyryl-CoA. (260 aa)
Swol_2030KEGG: cac:CAC2708 3-hydroxybutyryl-CoA dehydrogenase. (284 aa)
Swol_2031Short chain enoyl-CoA hydratase; KEGG: cpe:CPE2301 3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
Swol_2051acetyl-CoA acetyltransferase / 3-ketoacyl-CoA thiolase; KEGG: ctc:CTC00312 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
Swol_2128KEGG: dsy:DSY0633 hypothetical protein. (448 aa)
Swol_2145KEGG: mta:Moth_2257 acetolactate synthase, small subunit. (160 aa)
Swol_2146KEGG: mac:MA3792 acetolactate synthase large subunit. (562 aa)
Swol_2234KEGG: pai:PAE3274 2-ketoacid ferredoxin oxidoreductase beta subunit. (312 aa)
Swol_2235KEGG: tko:TK1980 2-oxoisovalerate:ferredoxin oxidoreductase, alpha subunit. (376 aa)
Swol_2236KEGG: sai:Saci_2251 pyruvate synthase delta chain. (85 aa)
Swol_2237KEGG: mka:MK0080 pyruvate:ferredoxin oxidoreductase, gamma subunit. (185 aa)
Swol_2566KEGG: fnu:FN1020 3-hydroxybutyryl-CoA dehydratase. (255 aa)
Your Current Organism:
Syntrophomonas wolfei Goettingen
NCBI taxonomy Id: 335541
Other names: S. wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen, Syntrophomonas wolfei subsp. wolfei str. Goettingen G311, Syntrophomonas wolfei subsp. wolfei str. Gottingen, Syntrophomonas wolfei subsp. wolfei strain Goettingen
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