(20 nodes) Mixed, incl. Senescence-Associated Secretory Phenotype (SASP), and Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9WX51_ZYMTI	Uncharacterized protein. (196 aa)
	F9WXT2_ZYMTI	C2H2-type domain-containing protein. (409 aa)
	F9WZJ2_ZYMTI	FYVE-type domain-containing protein. (52 aa)
	F9WZL8_ZYMTI	Uncharacterized protein. (379 aa)
	F9WZX6_ZYMTI	Uncharacterized protein. (154 aa)
	LKH1	Serine/threonine protein kinase. (605 aa)
	F9X4T1_ZYMTI	Hydrophobin-like protein. (463 aa)
	F9X5G8_ZYMTI	Uncharacterized protein. (348 aa)
	F9X5R5_ZYMTI	Homeobox domain-containing protein. (433 aa)
	F9X6Y4_ZYMTI	Homeobox domain-containing protein. (710 aa)
	F9X9K7_ZYMTI	Uncharacterized protein. (626 aa)
	F9XER8_ZYMTI	Uncharacterized protein. (501 aa)
	F9XID3_ZYMTI	SUN domain-containing protein. (443 aa)
	F9XIU0_ZYMTI	Uncharacterized protein. (114 aa)
	F9XJX0_ZYMTI	Uncharacterized protein. (631 aa)
	F9XK84_ZYMTI	Apple domain-containing protein. (382 aa)
	F9XNH2_ZYMTI	Uncharacterized protein. (753 aa)
	F9XP03_ZYMTI	Uncharacterized protein. (561 aa)
	F9XQ86_ZYMTI	ABM domain-containing protein. (119 aa)
	F9XQU7_ZYMTI	DDE_3 domain-containing protein. (52 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WXT2_ZYMTI	LKH1	F9WXT2	F9X290	C2H2-type domain-containing protein.	Serine/threonine protein kinase.	0.414
F9WZJ2_ZYMTI	F9XER8_ZYMTI	F9WZJ2	F9XER8	FYVE-type domain-containing protein.	Uncharacterized protein.	0.487
F9X5R5_ZYMTI	F9XER8_ZYMTI	F9X5R5	F9XER8	Homeobox domain-containing protein.	Uncharacterized protein.	0.530
F9X9K7_ZYMTI	F9XID3_ZYMTI	F9X9K7	F9XID3	Uncharacterized protein.	SUN domain-containing protein.	0.648
F9XER8_ZYMTI	F9WZJ2_ZYMTI	F9XER8	F9WZJ2	Uncharacterized protein.	FYVE-type domain-containing protein.	0.487
F9XER8_ZYMTI	F9X5R5_ZYMTI	F9XER8	F9X5R5	Uncharacterized protein.	Homeobox domain-containing protein.	0.530
F9XID3_ZYMTI	F9X9K7_ZYMTI	F9XID3	F9X9K7	SUN domain-containing protein.	Uncharacterized protein.	0.648
LKH1	F9WXT2_ZYMTI	F9X290	F9WXT2	Serine/threonine protein kinase.	C2H2-type domain-containing protein.	0.414