(50 nodes) Sm-like protein family complex network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9WXK7_ZYMTI	MPN domain-containing protein. (2365 aa)
	F9WXX2_ZYMTI	Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (132 aa)
	F9WY84_ZYMTI	WD_REPEATS_REGION domain-containing protein. (522 aa)
	F9WYA3_ZYMTI	Uncharacterized protein. (247 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (89 aa)
	F9WZ26_ZYMTI	Uncharacterized protein. (1295 aa)
	F9WZP6_ZYMTI	Uncharacterized protein. (223 aa)
	F9X0F0_ZYMTI	Uncharacterized protein. (204 aa)
	F9X0K9_ZYMTI	Nop domain-containing protein. (617 aa)
	F9X0S3_ZYMTI	Matrin-type domain-containing protein. (174 aa)
	F9X1C9_ZYMTI	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	F9X1U5_ZYMTI	Uncharacterized protein. (304 aa)
	F9X1U6_ZYMTI	Small nuclear ribonucleoprotein Sm D3. (119 aa)
	F9X381_ZYMTI	Sm domain-containing protein. (83 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
	F9X4R1_ZYMTI	RRM domain-containing protein. (603 aa)
	F9X4U4_ZYMTI	CPSF_A domain-containing protein. (1218 aa)
	F9X4Y9_ZYMTI	PSP domain-containing protein. (591 aa)
	F9X7P1_ZYMTI	Uncharacterized protein. (108 aa)
	F9X7S5_ZYMTI	Uncharacterized protein. (746 aa)
	F9X8J5_ZYMTI	Uncharacterized protein. (2202 aa)
	F9X8Y9_ZYMTI	WD_REPEATS_REGION domain-containing protein. (357 aa)
	F9X9G5_ZYMTI	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (204 aa)
	F9XB57_ZYMTI	Small nuclear ribonucleoprotein G. (93 aa)
	F9XBT4_ZYMTI	SF3b1 domain-containing protein. (1190 aa)
	F9XC91_ZYMTI	Tr-type G domain-containing protein. (988 aa)
	F9XCB8_ZYMTI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (99 aa)
	F9XDR4_ZYMTI	RRM domain-containing protein. (115 aa)
	F9XE14_ZYMTI	Uncharacterized protein. (302 aa)
	F9XEF6_ZYMTI	Uncharacterized protein. (936 aa)
	F9XEM1_ZYMTI	Uncharacterized protein. (594 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (81 aa)
	F9XFJ7_ZYMTI	RRM domain-containing protein. (111 aa)
	F9XFS2_ZYMTI	Uncharacterized protein; Belongs to the DEAD box helicase family. (640 aa)
	F9XFW1_ZYMTI	Sm domain-containing protein. (207 aa)
	F9XG58_ZYMTI	Sm domain-containing protein. (98 aa)
	F9XGV6_ZYMTI	Matrin-type domain-containing protein. (511 aa)
	F9XI55_ZYMTI	Uncharacterized protein. (343 aa)
	F9XJ81_ZYMTI	PAT1 domain-containing protein. (784 aa)
	F9XJD9_ZYMTI	Sm domain-containing protein. (89 aa)
	F9XJS7_ZYMTI	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	F9XJS8_ZYMTI	Uncharacterized protein. (247 aa)
	F9XJV3_ZYMTI	Uncharacterized protein. (160 aa)
	F9XK91_ZYMTI	Uncharacterized protein. (233 aa)
	F9XKM0_ZYMTI	Uncharacterized protein. (1315 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (129 aa)
	F9XLF5_ZYMTI	Small nuclear ribonucleoprotein Sm D2. (122 aa)
	F9XN79_ZYMTI	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (133 aa)
	F9XQ05_ZYMTI	Uncharacterized protein. (503 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WXK7_ZYMTI	F9WXX2_ZYMTI	F9WXK7	F9WXX2	MPN domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.892
F9WXK7_ZYMTI	F9WY84_ZYMTI	F9WXK7	F9WY84	MPN domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.994
F9WXK7_ZYMTI	F9WYA3_ZYMTI	F9WXK7	F9WYA3	MPN domain-containing protein.	Uncharacterized protein.	0.996
F9WXK7_ZYMTI	F9WZP6_ZYMTI	F9WXK7	F9WZP6	MPN domain-containing protein.	Uncharacterized protein.	0.887
F9WXK7_ZYMTI	F9X0F0_ZYMTI	F9WXK7	F9X0F0	MPN domain-containing protein.	Uncharacterized protein.	0.832
F9WXK7_ZYMTI	F9X0K9_ZYMTI	F9WXK7	F9X0K9	MPN domain-containing protein.	Nop domain-containing protein.	0.997
F9WXK7_ZYMTI	F9X0S3_ZYMTI	F9WXK7	F9X0S3	MPN domain-containing protein.	Matrin-type domain-containing protein.	0.974
F9WXK7_ZYMTI	F9X1C9_ZYMTI	F9WXK7	F9X1C9	MPN domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.973
F9WXK7_ZYMTI	F9X1U5_ZYMTI	F9WXK7	F9X1U5	MPN domain-containing protein.	Uncharacterized protein.	0.938
F9WXK7_ZYMTI	F9X1U6_ZYMTI	F9WXK7	F9X1U6	MPN domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.958
F9WXK7_ZYMTI	F9X381_ZYMTI	F9WXK7	F9X381	MPN domain-containing protein.	Sm domain-containing protein.	0.915
F9WXK7_ZYMTI	F9X4R1_ZYMTI	F9WXK7	F9X4R1	MPN domain-containing protein.	RRM domain-containing protein.	0.843
F9WXK7_ZYMTI	F9X4U4_ZYMTI	F9WXK7	F9X4U4	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.988
F9WXK7_ZYMTI	F9X4Y9_ZYMTI	F9WXK7	F9X4Y9	MPN domain-containing protein.	PSP domain-containing protein.	0.993
F9WXK7_ZYMTI	F9X7P1_ZYMTI	F9WXK7	F9X7P1	MPN domain-containing protein.	Uncharacterized protein.	0.883
F9WXK7_ZYMTI	F9X8J5_ZYMTI	F9WXK7	F9X8J5	MPN domain-containing protein.	Uncharacterized protein.	0.999
F9WXK7_ZYMTI	F9X8Y9_ZYMTI	F9WXK7	F9X8Y9	MPN domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
F9WXK7_ZYMTI	F9X9G5_ZYMTI	F9WXK7	F9X9G5	MPN domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.689
F9WXK7_ZYMTI	F9XB57_ZYMTI	F9WXK7	F9XB57	MPN domain-containing protein.	Small nuclear ribonucleoprotein G.	0.996
F9WXK7_ZYMTI	F9XBT4_ZYMTI	F9WXK7	F9XBT4	MPN domain-containing protein.	SF3b1 domain-containing protein.	0.986