(13 nodes) Exon-exon junction complex, and Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9WYC9_ZYMTI	Uncharacterized protein. (156 aa)
	F9WZL0_ZYMTI	RRM domain-containing protein. (158 aa)
	F9X183_ZYMTI	Uncharacterized protein. (680 aa)
	F9X246_ZYMTI	Uncharacterized protein. (311 aa)
	HCP2401	Histone deacetylase complex protein. (269 aa)
	F9X3U7_ZYMTI	EST1_DNA_bind domain-containing protein. (374 aa)
	F9X577_ZYMTI	Uncharacterized protein. (541 aa)
	F9XA58_ZYMTI	Uncharacterized protein. (1092 aa)
	F9XA63_ZYMTI	AAA_12 domain-containing protein. (537 aa)
	F9XD99_ZYMTI	Mago-bind domain-containing protein. (176 aa)
	F9XGV7_ZYMTI	Uncharacterized protein; Belongs to the DEAD box helicase family. (400 aa)
	F9XKC7_ZYMTI	RRM domain-containing protein. (573 aa)
	F9XLM6_ZYMTI	Uncharacterized protein. (1147 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WYC9_ZYMTI	F9WZL0_ZYMTI	F9WYC9	F9WZL0	Uncharacterized protein.	RRM domain-containing protein.	0.999
F9WYC9_ZYMTI	F9X183_ZYMTI	F9WYC9	F9X183	Uncharacterized protein.	Uncharacterized protein.	0.688
F9WYC9_ZYMTI	F9X246_ZYMTI	F9WYC9	F9X246	Uncharacterized protein.	Uncharacterized protein.	0.697
F9WYC9_ZYMTI	F9X3U7_ZYMTI	F9WYC9	F9X3U7	Uncharacterized protein.	EST1_DNA_bind domain-containing protein.	0.620
F9WYC9_ZYMTI	F9X577_ZYMTI	F9WYC9	F9X577	Uncharacterized protein.	Uncharacterized protein.	0.842
F9WYC9_ZYMTI	F9XA58_ZYMTI	F9WYC9	F9XA58	Uncharacterized protein.	Uncharacterized protein.	0.451
F9WYC9_ZYMTI	F9XA63_ZYMTI	F9WYC9	F9XA63	Uncharacterized protein.	AAA_12 domain-containing protein.	0.451
F9WYC9_ZYMTI	F9XD99_ZYMTI	F9WYC9	F9XD99	Uncharacterized protein.	Mago-bind domain-containing protein.	0.993
F9WYC9_ZYMTI	F9XGV7_ZYMTI	F9WYC9	F9XGV7	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.998
F9WYC9_ZYMTI	F9XKC7_ZYMTI	F9WYC9	F9XKC7	Uncharacterized protein.	RRM domain-containing protein.	0.993
F9WYC9_ZYMTI	F9XLM6_ZYMTI	F9WYC9	F9XLM6	Uncharacterized protein.	Uncharacterized protein.	0.858
F9WYC9_ZYMTI	HCP2401	F9WYC9	F9X2S0	Uncharacterized protein.	Histone deacetylase complex protein.	0.839
F9WZL0_ZYMTI	F9WYC9_ZYMTI	F9WZL0	F9WYC9	RRM domain-containing protein.	Uncharacterized protein.	0.999
F9WZL0_ZYMTI	F9X183_ZYMTI	F9WZL0	F9X183	RRM domain-containing protein.	Uncharacterized protein.	0.910
F9WZL0_ZYMTI	F9X246_ZYMTI	F9WZL0	F9X246	RRM domain-containing protein.	Uncharacterized protein.	0.832
F9WZL0_ZYMTI	F9X3U7_ZYMTI	F9WZL0	F9X3U7	RRM domain-containing protein.	EST1_DNA_bind domain-containing protein.	0.856
F9WZL0_ZYMTI	F9X577_ZYMTI	F9WZL0	F9X577	RRM domain-containing protein.	Uncharacterized protein.	0.722
F9WZL0_ZYMTI	F9XA58_ZYMTI	F9WZL0	F9XA58	RRM domain-containing protein.	Uncharacterized protein.	0.638
F9WZL0_ZYMTI	F9XA63_ZYMTI	F9WZL0	F9XA63	RRM domain-containing protein.	AAA_12 domain-containing protein.	0.638
F9WZL0_ZYMTI	F9XD99_ZYMTI	F9WZL0	F9XD99	RRM domain-containing protein.	Mago-bind domain-containing protein.	0.999