(16 nodes) Mixed, incl. Host cell nucleus, and Transcription factor TFIIIC complex network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9WWT0_ZYMTI	C2H2-type domain-containing protein. (675 aa)
	F9WYN7_ZYMTI	Uncharacterized protein. (816 aa)
	F9WZ17_ZYMTI	Fungal_trans domain-containing protein. (183 aa)
	F9WZ78_ZYMTI	Uncharacterized protein. (587 aa)
	F9WZV6_ZYMTI	Uncharacterized protein. (141 aa)
	F9X300_ZYMTI	Uncharacterized protein. (274 aa)
	F9X5Y1_ZYMTI	Isochorismatase domain-containing protein. (189 aa)
	F9X7W9_ZYMTI	BTB domain-containing protein. (352 aa)
	F9X868_ZYMTI	Uncharacterized protein. (425 aa)
	F9XBH5_ZYMTI	C2H2-type domain-containing protein. (361 aa)
	F9XBT6_ZYMTI	BTB domain-containing protein. (222 aa)
	F9XE28_ZYMTI	Uncharacterized protein. (675 aa)
	F9XII7_ZYMTI	Uncharacterized protein. (594 aa)
	F9XMY9_ZYMTI	Uncharacterized protein. (1248 aa)
	F9XNG4_ZYMTI	Uncharacterized protein. (596 aa)
	F9XQJ9_ZYMTI	Uncharacterized protein. (100 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WZ78_ZYMTI	F9XII7_ZYMTI	F9WZ78	F9XII7	Uncharacterized protein.	Uncharacterized protein.	0.505
F9WZ78_ZYMTI	F9XMY9_ZYMTI	F9WZ78	F9XMY9	Uncharacterized protein.	Uncharacterized protein.	0.697
F9X300_ZYMTI	F9XII7_ZYMTI	F9X300	F9XII7	Uncharacterized protein.	Uncharacterized protein.	0.873
F9X300_ZYMTI	F9XMY9_ZYMTI	F9X300	F9XMY9	Uncharacterized protein.	Uncharacterized protein.	0.856
F9XII7_ZYMTI	F9WZ78_ZYMTI	F9XII7	F9WZ78	Uncharacterized protein.	Uncharacterized protein.	0.505
F9XII7_ZYMTI	F9X300_ZYMTI	F9XII7	F9X300	Uncharacterized protein.	Uncharacterized protein.	0.873
F9XII7_ZYMTI	F9XMY9_ZYMTI	F9XII7	F9XMY9	Uncharacterized protein.	Uncharacterized protein.	0.999
F9XMY9_ZYMTI	F9WZ78_ZYMTI	F9XMY9	F9WZ78	Uncharacterized protein.	Uncharacterized protein.	0.697
F9XMY9_ZYMTI	F9X300_ZYMTI	F9XMY9	F9X300	Uncharacterized protein.	Uncharacterized protein.	0.856
F9XMY9_ZYMTI	F9XII7_ZYMTI	F9XMY9	F9XII7	Uncharacterized protein.	Uncharacterized protein.	0.999