(5 nodes) GTPase complex network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MgGpa2	G-protein alpha subunit. (355 aa)
	F9X155_ZYMTI	G protein gamma domain-containing protein. (92 aa)
	MgGpb1	G-protein beta subunit. (374 aa)
	F9X4K9_ZYMTI	Uncharacterized protein. (304 aa)
	Cla4	Non-specific serine/threonine protein kinase. (815 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cla4	F9X155_ZYMTI	F9XIM5	F9X155	Non-specific serine/threonine protein kinase.	G protein gamma domain-containing protein.	0.921
Cla4	MgGpb1	F9XIM5	F9X1T0	Non-specific serine/threonine protein kinase.	G-protein beta subunit.	0.974
F9X155_ZYMTI	Cla4	F9X155	F9XIM5	G protein gamma domain-containing protein.	Non-specific serine/threonine protein kinase.	0.921
F9X155_ZYMTI	MgGpb1	F9X155	F9X1T0	G protein gamma domain-containing protein.	G-protein beta subunit.	0.995
F9X4K9_ZYMTI	MgGpb1	F9X4K9	F9X1T0	Uncharacterized protein.	G-protein beta subunit.	0.792
MgGpa2	MgGpb1	F9WYM3	F9X1T0	G-protein alpha subunit.	G-protein beta subunit.	0.892
MgGpb1	Cla4	F9X1T0	F9XIM5	G-protein beta subunit.	Non-specific serine/threonine protein kinase.	0.974
MgGpb1	F9X155_ZYMTI	F9X1T0	F9X155	G-protein beta subunit.	G protein gamma domain-containing protein.	0.995
MgGpb1	F9X4K9_ZYMTI	F9X1T0	F9X4K9	G-protein beta subunit.	Uncharacterized protein.	0.792
MgGpb1	MgGpa2	F9X1T0	F9WYM3	G-protein beta subunit.	G-protein alpha subunit.	0.892