(29 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9WWI3_ZYMTI	RNase_PH domain-containing protein. (202 aa)
	F9WWR5_ZYMTI	zf-GRF domain-containing protein. (390 aa)
	F9WXU1_ZYMTI	RNase_PH domain-containing protein. (250 aa)
	F9WY00_ZYMTI	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (252 aa)
	F9WZ99_ZYMTI	PINc domain-containing protein. (152 aa)
	F9X183_ZYMTI	Uncharacterized protein. (680 aa)
	F9X1B2_ZYMTI	RNase_PH domain-containing protein. (354 aa)
	F9X1R8_ZYMTI	Uncharacterized protein. (58 aa)
	F9X1R9_ZYMTI	Uncharacterized protein. (401 aa)
	F9X437_ZYMTI	Uncharacterized protein; Belongs to the DEAD box helicase family. (529 aa)
	F9X4G5_ZYMTI	NTP_transf_9 domain-containing protein. (150 aa)
	F9X5H7_ZYMTI	Uncharacterized protein. (292 aa)
	F9X7J4_ZYMTI	Uncharacterized protein. (219 aa)
	F9X7K0_ZYMTI	Uncharacterized protein. (1263 aa)
	F9X852_ZYMTI	RNase_PH domain-containing protein. (331 aa)
	F9XA58_ZYMTI	Uncharacterized protein. (1092 aa)
	F9XA63_ZYMTI	AAA_12 domain-containing protein. (537 aa)
	F9XD99_ZYMTI	Mago-bind domain-containing protein. (176 aa)
	F9XF44_ZYMTI	Uncharacterized protein. (144 aa)
	F9XHI4_ZYMTI	Uncharacterized protein. (364 aa)
	F9XHI5_ZYMTI	Uncharacterized protein. (335 aa)
	F9XHM0_ZYMTI	Uncharacterized protein. (300 aa)
	F9XI57_ZYMTI	RRM_2 domain-containing protein. (1056 aa)
	F9XIC9_ZYMTI	Uncharacterized protein. (844 aa)
	F9XKC7_ZYMTI	RRM domain-containing protein. (573 aa)
	F9XLF2_ZYMTI	Nudix hydrolase domain-containing protein. (256 aa)
	F9XLM6_ZYMTI	Uncharacterized protein. (1147 aa)
	F9XMS5_ZYMTI	Uncharacterized protein. (1388 aa)
	F9XPB5_ZYMTI	WD_REPEATS_REGION domain-containing protein. (379 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WWI3_ZYMTI	F9WXU1_ZYMTI	F9WWI3	F9WXU1	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WWI3_ZYMTI	F9X1B2_ZYMTI	F9WWI3	F9X1B2	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.998
F9WWI3_ZYMTI	F9X4G5_ZYMTI	F9WWI3	F9X4G5	RNase_PH domain-containing protein.	NTP_transf_9 domain-containing protein.	0.525
F9WWI3_ZYMTI	F9X5H7_ZYMTI	F9WWI3	F9X5H7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
F9WWI3_ZYMTI	F9X7K0_ZYMTI	F9WWI3	F9X7K0	RNase_PH domain-containing protein.	Uncharacterized protein.	0.897
F9WWI3_ZYMTI	F9X852_ZYMTI	F9WWI3	F9X852	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WWI3_ZYMTI	F9XHI4_ZYMTI	F9WWI3	F9XHI4	RNase_PH domain-containing protein.	Uncharacterized protein.	0.668
F9WWI3_ZYMTI	F9XHI5_ZYMTI	F9WWI3	F9XHI5	RNase_PH domain-containing protein.	Uncharacterized protein.	0.668
F9WWI3_ZYMTI	F9XHM0_ZYMTI	F9WWI3	F9XHM0	RNase_PH domain-containing protein.	Uncharacterized protein.	0.643
F9WWI3_ZYMTI	F9XLF2_ZYMTI	F9WWI3	F9XLF2	RNase_PH domain-containing protein.	Nudix hydrolase domain-containing protein.	0.525
F9WWI3_ZYMTI	F9XMS5_ZYMTI	F9WWI3	F9XMS5	RNase_PH domain-containing protein.	Uncharacterized protein.	0.815
F9WWI3_ZYMTI	F9XPB5_ZYMTI	F9WWI3	F9XPB5	RNase_PH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.772
F9WWR5_ZYMTI	F9XHM0_ZYMTI	F9WWR5	F9XHM0	zf-GRF domain-containing protein.	Uncharacterized protein.	0.644
F9WWR5_ZYMTI	F9XIC9_ZYMTI	F9WWR5	F9XIC9	zf-GRF domain-containing protein.	Uncharacterized protein.	0.612
F9WWR5_ZYMTI	F9XKC7_ZYMTI	F9WWR5	F9XKC7	zf-GRF domain-containing protein.	RRM domain-containing protein.	0.832
F9WWR5_ZYMTI	F9XLM6_ZYMTI	F9WWR5	F9XLM6	zf-GRF domain-containing protein.	Uncharacterized protein.	0.814
F9WXU1_ZYMTI	F9WWI3_ZYMTI	F9WXU1	F9WWI3	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WXU1_ZYMTI	F9X1B2_ZYMTI	F9WXU1	F9X1B2	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WXU1_ZYMTI	F9X4G5_ZYMTI	F9WXU1	F9X4G5	RNase_PH domain-containing protein.	NTP_transf_9 domain-containing protein.	0.477
F9WXU1_ZYMTI	F9X5H7_ZYMTI	F9WXU1	F9X5H7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999