(20 nodes) rRNA catabolic process network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9WXU1_ZYMTI	RNase_PH domain-containing protein. (250 aa)
	F9WZL9_ZYMTI	ECR1_N domain-containing protein. (311 aa)
	F9X0R8_ZYMTI	S1 motif domain-containing protein; Belongs to the RNR ribonuclease family. (993 aa)
	F9X1B2_ZYMTI	RNase_PH domain-containing protein. (354 aa)
	F9X5H7_ZYMTI	Uncharacterized protein. (292 aa)
	F9X6N8_ZYMTI	Topoisomerase-related protein. (565 aa)
	F9X6R1_ZYMTI	S1 motif domain-containing protein. (187 aa)
	PATPB2401	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family. (389 aa)
	F9X703_ZYMTI	Uncharacterized protein. (267 aa)
	F9X852_ZYMTI	RNase_PH domain-containing protein. (331 aa)
	F9XH55_ZYMTI	Uncharacterized protein. (360 aa)
	F9XHI4_ZYMTI	Uncharacterized protein. (364 aa)
	F9XHI5_ZYMTI	Uncharacterized protein. (335 aa)
	F9XKM0_ZYMTI	Uncharacterized protein. (1315 aa)
	F9XML9_ZYMTI	HRDC domain-containing protein. (796 aa)
	F9XPS8_ZYMTI	Uncharacterized protein. (129 aa)
	F9XPM6_ZYMTI	Uncharacterized protein. (249 aa)
	F9WWI2_ZYMTI	Uncharacterized protein. (483 aa)
	F9WWI3_ZYMTI	RNase_PH domain-containing protein. (202 aa)
	F9WXI7_ZYMTI	eRF1_1 domain-containing protein. (556 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WWI2_ZYMTI	F9WXU1_ZYMTI	F9WWI2	F9WXU1	Uncharacterized protein.	RNase_PH domain-containing protein.	0.886
F9WWI2_ZYMTI	F9WZL9_ZYMTI	F9WWI2	F9WZL9	Uncharacterized protein.	ECR1_N domain-containing protein.	0.964
F9WWI2_ZYMTI	F9X0R8_ZYMTI	F9WWI2	F9X0R8	Uncharacterized protein.	S1 motif domain-containing protein; Belongs to the RNR ribonuclease family.	0.747
F9WWI2_ZYMTI	F9X1B2_ZYMTI	F9WWI2	F9X1B2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.972
F9WWI2_ZYMTI	F9X5H7_ZYMTI	F9WWI2	F9X5H7	Uncharacterized protein.	Uncharacterized protein.	0.955
F9WWI2_ZYMTI	F9X6R1_ZYMTI	F9WWI2	F9X6R1	Uncharacterized protein.	S1 motif domain-containing protein.	0.956
F9WWI2_ZYMTI	F9X852_ZYMTI	F9WWI2	F9X852	Uncharacterized protein.	RNase_PH domain-containing protein.	0.954
F9WWI2_ZYMTI	F9XHI4_ZYMTI	F9WWI2	F9XHI4	Uncharacterized protein.	Uncharacterized protein.	0.576
F9WWI2_ZYMTI	F9XHI5_ZYMTI	F9WWI2	F9XHI5	Uncharacterized protein.	Uncharacterized protein.	0.576
F9WWI2_ZYMTI	F9XPM6_ZYMTI	F9WWI2	F9XPM6	Uncharacterized protein.	Uncharacterized protein.	0.967
F9WWI2_ZYMTI	F9XPS8_ZYMTI	F9WWI2	F9XPS8	Uncharacterized protein.	Uncharacterized protein.	0.953
F9WWI3_ZYMTI	F9WXU1_ZYMTI	F9WWI3	F9WXU1	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WWI3_ZYMTI	F9WZL9_ZYMTI	F9WWI3	F9WZL9	RNase_PH domain-containing protein.	ECR1_N domain-containing protein.	0.999
F9WWI3_ZYMTI	F9X0R8_ZYMTI	F9WWI3	F9X0R8	RNase_PH domain-containing protein.	S1 motif domain-containing protein; Belongs to the RNR ribonuclease family.	0.998
F9WWI3_ZYMTI	F9X1B2_ZYMTI	F9WWI3	F9X1B2	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.998
F9WWI3_ZYMTI	F9X5H7_ZYMTI	F9WWI3	F9X5H7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
F9WWI3_ZYMTI	F9X6R1_ZYMTI	F9WWI3	F9X6R1	RNase_PH domain-containing protein.	S1 motif domain-containing protein.	0.999
F9WWI3_ZYMTI	F9X852_ZYMTI	F9WWI3	F9X852	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WWI3_ZYMTI	F9XHI4_ZYMTI	F9WWI3	F9XHI4	RNase_PH domain-containing protein.	Uncharacterized protein.	0.668
F9WWI3_ZYMTI	F9XHI5_ZYMTI	F9WWI3	F9XHI5	RNase_PH domain-containing protein.	Uncharacterized protein.	0.668