(12 nodes) Endoplasmic reticulum unfolded protein response network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9X0D4_ZYMTI	Glucosidase II beta subunit-like protein. (545 aa)
	F9WWP9_ZYMTI	Uncharacterized protein. (171 aa)
	MgKAR2	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family. (659 aa)
	F9XMT4_ZYMTI	Uncharacterized protein. (232 aa)
	F9XM14_ZYMTI	OTU domain-containing protein. (355 aa)
	F9XIM0_ZYMTI	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (262 aa)
	F9XII6_ZYMTI	Uncharacterized protein. (418 aa)
	F9XFY1_ZYMTI	Uncharacterized protein. (1169 aa)
	F9XFU0_ZYMTI	Uncharacterized protein; Belongs to the BI1 family. (270 aa)
	F9XDJ3_ZYMTI	Uncharacterized protein. (357 aa)
	F9X9X8_ZYMTI	Protein kinase domain-containing protein. (252 aa)
	F9X8H4_ZYMTI	Uncharacterized protein. (448 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WWP9_ZYMTI	F9XIM0_ZYMTI	F9WWP9	F9XIM0	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.943
F9WWP9_ZYMTI	MgKAR2	F9WWP9	F9WWJ1	Uncharacterized protein.	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	0.638
F9X0D4_ZYMTI	F9XIM0_ZYMTI	F9X0D4	F9XIM0	Glucosidase II beta subunit-like protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.943
F9X0D4_ZYMTI	MgKAR2	F9X0D4	F9WWJ1	Glucosidase II beta subunit-like protein.	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	0.638
F9X9X8_ZYMTI	MgKAR2	F9X9X8	F9WWJ1	Protein kinase domain-containing protein.	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	0.884
F9XFY1_ZYMTI	MgKAR2	F9XFY1	F9WWJ1	Uncharacterized protein.	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	0.978
F9XIM0_ZYMTI	F9WWP9_ZYMTI	F9XIM0	F9WWP9	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.943
F9XIM0_ZYMTI	F9X0D4_ZYMTI	F9XIM0	F9X0D4	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Glucosidase II beta subunit-like protein.	0.943
F9XIM0_ZYMTI	MgKAR2	F9XIM0	F9WWJ1	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	0.969
MgKAR2	F9WWP9_ZYMTI	F9WWJ1	F9WWP9	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.638
MgKAR2	F9X0D4_ZYMTI	F9WWJ1	F9X0D4	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	Glucosidase II beta subunit-like protein.	0.638
MgKAR2	F9X9X8_ZYMTI	F9WWJ1	F9X9X8	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	Protein kinase domain-containing protein.	0.884
MgKAR2	F9XFY1_ZYMTI	F9WWJ1	F9XFY1	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.978
MgKAR2	F9XIM0_ZYMTI	F9WWJ1	F9XIM0	Immunoglobulin heavy chain-binding protein, KAR2; Belongs to the heat shock protein 70 family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.969