(7 nodes) multi-eIF complex network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NIP1	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (870 aa)
	F9XEP9_ZYMTI	Tr-type G domain-containing protein. (515 aa)
	F9XCA5_ZYMTI	RRM domain-containing protein. (292 aa)
	F9WXV6_ZYMTI	eIF2B_5 domain-containing protein. (318 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (742 aa)
	F9X560_ZYMTI	W2 domain-containing protein. (427 aa)
	F9XL14_ZYMTI	S1 motif domain-containing protein. (307 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WXV6_ZYMTI	F9X560_ZYMTI	F9WXV6	F9X560	eIF2B_5 domain-containing protein.	W2 domain-containing protein.	0.997
F9WXV6_ZYMTI	F9XCA5_ZYMTI	F9WXV6	F9XCA5	eIF2B_5 domain-containing protein.	RRM domain-containing protein.	0.996
F9WXV6_ZYMTI	F9XEP9_ZYMTI	F9WXV6	F9XEP9	eIF2B_5 domain-containing protein.	Tr-type G domain-containing protein.	0.999
F9WXV6_ZYMTI	F9XL14_ZYMTI	F9WXV6	F9XL14	eIF2B_5 domain-containing protein.	S1 motif domain-containing protein.	0.999
F9WXV6_ZYMTI	NIP1	F9WXV6	F9X7B1	eIF2B_5 domain-containing protein.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.998
F9WXV6_ZYMTI	PRT1	F9WXV6	F9XFW5	eIF2B_5 domain-containing protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.998
F9X560_ZYMTI	F9WXV6_ZYMTI	F9X560	F9WXV6	W2 domain-containing protein.	eIF2B_5 domain-containing protein.	0.997
F9X560_ZYMTI	F9XCA5_ZYMTI	F9X560	F9XCA5	W2 domain-containing protein.	RRM domain-containing protein.	0.999
F9X560_ZYMTI	F9XEP9_ZYMTI	F9X560	F9XEP9	W2 domain-containing protein.	Tr-type G domain-containing protein.	0.999
F9X560_ZYMTI	F9XL14_ZYMTI	F9X560	F9XL14	W2 domain-containing protein.	S1 motif domain-containing protein.	0.999
F9X560_ZYMTI	NIP1	F9X560	F9X7B1	W2 domain-containing protein.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
F9X560_ZYMTI	PRT1	F9X560	F9XFW5	W2 domain-containing protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.999
F9XCA5_ZYMTI	F9WXV6_ZYMTI	F9XCA5	F9WXV6	RRM domain-containing protein.	eIF2B_5 domain-containing protein.	0.996
F9XCA5_ZYMTI	F9X560_ZYMTI	F9XCA5	F9X560	RRM domain-containing protein.	W2 domain-containing protein.	0.999
F9XCA5_ZYMTI	F9XEP9_ZYMTI	F9XCA5	F9XEP9	RRM domain-containing protein.	Tr-type G domain-containing protein.	0.998
F9XCA5_ZYMTI	F9XL14_ZYMTI	F9XCA5	F9XL14	RRM domain-containing protein.	S1 motif domain-containing protein.	0.996
F9XCA5_ZYMTI	NIP1	F9XCA5	F9X7B1	RRM domain-containing protein.	Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.999
F9XCA5_ZYMTI	PRT1	F9XCA5	F9XFW5	RRM domain-containing protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.999
F9XEP9_ZYMTI	F9WXV6_ZYMTI	F9XEP9	F9WXV6	Tr-type G domain-containing protein.	eIF2B_5 domain-containing protein.	0.999
F9XEP9_ZYMTI	F9X560_ZYMTI	F9XEP9	F9X560	Tr-type G domain-containing protein.	W2 domain-containing protein.	0.999