(43 nodes) Regulation of mRNA catabolic process network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9XJM2_ZYMTI	Uncharacterized protein. (353 aa)
	F9X686_ZYMTI	Uncharacterized protein. (677 aa)
	F9X7X6_ZYMTI	RRM domain-containing protein. (499 aa)
	F9X852_ZYMTI	RNase_PH domain-containing protein. (331 aa)
	F9X8V1_ZYMTI	Tr-type G domain-containing protein. (709 aa)
	F9X9G6_ZYMTI	WD_REPEATS_REGION domain-containing protein. (316 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1147 aa)
	F9XCX1_ZYMTI	Uncharacterized protein. (529 aa)
	F9XD94_ZYMTI	Uncharacterized protein. (498 aa)
	F9X4K2_ZYMTI	PUM-HD domain-containing protein. (277 aa)
	F9X4G5_ZYMTI	NTP_transf_9 domain-containing protein. (150 aa)
	F9X3R2_ZYMTI	Uncharacterized protein. (486 aa)
	F9X2Y4_ZYMTI	Tr-type G domain-containing protein. (657 aa)
	F9X2T9_ZYMTI	PUM-HD domain-containing protein. (432 aa)
	F9X292_ZYMTI	Pan3_PK domain-containing protein. (482 aa)
	F9X203_ZYMTI	Uncharacterized protein. (2296 aa)
	F9X1R9_ZYMTI	Uncharacterized protein. (401 aa)
	F9X1R8_ZYMTI	Uncharacterized protein. (58 aa)
	F9X1B2_ZYMTI	RNase_PH domain-containing protein. (354 aa)
	F9X075_ZYMTI	RPOL4c domain-containing protein. (159 aa)
	F9WZV5_ZYMTI	Uncharacterized protein. (625 aa)
	F9WZL9_ZYMTI	ECR1_N domain-containing protein. (311 aa)
	F9WYC4_ZYMTI	S1 motif domain-containing protein. (167 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (132 aa)
	F9WWI3_ZYMTI	RNase_PH domain-containing protein. (202 aa)
	F9XRE3_ZYMTI	Uncharacterized protein. (171 aa)
	F9XPM6_ZYMTI	Uncharacterized protein. (249 aa)
	F9XNA8_ZYMTI	Endo/exonuclease/phosphatase domain-containing protein. (692 aa)
	F9XN90_ZYMTI	SAM domain-containing protein. (637 aa)
	F9XML9_ZYMTI	HRDC domain-containing protein. (796 aa)
	F9XLF2_ZYMTI	Nudix hydrolase domain-containing protein. (256 aa)
	Pkc1b	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1167 aa)
	F9X649_ZYMTI	Uncharacterized protein. (174 aa)
	F9XJG9_ZYMTI	Uncharacterized protein. (924 aa)
	F9XJ81_ZYMTI	PAT1 domain-containing protein. (784 aa)
	F9XIF9_ZYMTI	Uncharacterized protein. (337 aa)
	F9XI71_ZYMTI	Uncharacterized protein. (743 aa)
	F9XHM0_ZYMTI	Uncharacterized protein. (300 aa)
	F9XGG0_ZYMTI	Uncharacterized protein. (434 aa)
	F9XFH9_ZYMTI	RRM domain-containing protein. (90 aa)
	F9X4N5_ZYMTI	Pumilio-related RNA binding protein. (1060 aa)
	F9X5H7_ZYMTI	Uncharacterized protein. (292 aa)
	F9X5N7_ZYMTI	Uncharacterized protein. (1114 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WWI3_ZYMTI	F9WZL9_ZYMTI	F9WWI3	F9WZL9	RNase_PH domain-containing protein.	ECR1_N domain-containing protein.	0.999
F9WWI3_ZYMTI	F9X1B2_ZYMTI	F9WWI3	F9X1B2	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.998
F9WWI3_ZYMTI	F9X4G5_ZYMTI	F9WWI3	F9X4G5	RNase_PH domain-containing protein.	NTP_transf_9 domain-containing protein.	0.525
F9WWI3_ZYMTI	F9X5H7_ZYMTI	F9WWI3	F9X5H7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
F9WWI3_ZYMTI	F9X686_ZYMTI	F9WWI3	F9X686	RNase_PH domain-containing protein.	Uncharacterized protein.	0.585
F9WWI3_ZYMTI	F9X852_ZYMTI	F9WWI3	F9X852	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WWI3_ZYMTI	F9XHM0_ZYMTI	F9WWI3	F9XHM0	RNase_PH domain-containing protein.	Uncharacterized protein.	0.643
F9WWI3_ZYMTI	F9XLF2_ZYMTI	F9WWI3	F9XLF2	RNase_PH domain-containing protein.	Nudix hydrolase domain-containing protein.	0.525
F9WWI3_ZYMTI	F9XPM6_ZYMTI	F9WWI3	F9XPM6	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
F9WYC4_ZYMTI	F9X075_ZYMTI	F9WYC4	F9X075	S1 motif domain-containing protein.	RPOL4c domain-containing protein.	0.999
F9WYC4_ZYMTI	F9XI71_ZYMTI	F9WYC4	F9XI71	S1 motif domain-containing protein.	Uncharacterized protein.	0.411
F9WZL9_ZYMTI	F9WWI3_ZYMTI	F9WZL9	F9WWI3	ECR1_N domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WZL9_ZYMTI	F9X1B2_ZYMTI	F9WZL9	F9X1B2	ECR1_N domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WZL9_ZYMTI	F9X4G5_ZYMTI	F9WZL9	F9X4G5	ECR1_N domain-containing protein.	NTP_transf_9 domain-containing protein.	0.663
F9WZL9_ZYMTI	F9X5H7_ZYMTI	F9WZL9	F9X5H7	ECR1_N domain-containing protein.	Uncharacterized protein.	0.999
F9WZL9_ZYMTI	F9X686_ZYMTI	F9WZL9	F9X686	ECR1_N domain-containing protein.	Uncharacterized protein.	0.440
F9WZL9_ZYMTI	F9X852_ZYMTI	F9WZL9	F9X852	ECR1_N domain-containing protein.	RNase_PH domain-containing protein.	0.999
F9WZL9_ZYMTI	F9XHM0_ZYMTI	F9WZL9	F9XHM0	ECR1_N domain-containing protein.	Uncharacterized protein.	0.692
F9WZL9_ZYMTI	F9XLF2_ZYMTI	F9WZL9	F9XLF2	ECR1_N domain-containing protein.	Nudix hydrolase domain-containing protein.	0.663
F9WZL9_ZYMTI	F9XML9_ZYMTI	F9WZL9	F9XML9	ECR1_N domain-containing protein.	HRDC domain-containing protein.	0.416