(5 nodes) Cellular response to amino acid stimulus network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9XGX6_ZYMTI	Methyltranfer_dom domain-containing protein. (592 aa)
	F9WWK6_ZYMTI	Uncharacterized protein. (146 aa)
	F9XQ68_ZYMTI	WD_REPEATS_REGION domain-containing protein. (1406 aa)
	F9XLA6_ZYMTI	Uncharacterized protein. (317 aa)
	F9XIP2_ZYMTI	Uncharacterized protein. (312 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WWK6_ZYMTI	F9XIP2_ZYMTI	F9WWK6	F9XIP2	Uncharacterized protein.	Uncharacterized protein.	0.967
F9WWK6_ZYMTI	F9XLA6_ZYMTI	F9WWK6	F9XLA6	Uncharacterized protein.	Uncharacterized protein.	0.962
F9WWK6_ZYMTI	F9XQ68_ZYMTI	F9WWK6	F9XQ68	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.950
F9XIP2_ZYMTI	F9WWK6_ZYMTI	F9XIP2	F9WWK6	Uncharacterized protein.	Uncharacterized protein.	0.967
F9XIP2_ZYMTI	F9XLA6_ZYMTI	F9XIP2	F9XLA6	Uncharacterized protein.	Uncharacterized protein.	0.999
F9XIP2_ZYMTI	F9XQ68_ZYMTI	F9XIP2	F9XQ68	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
F9XLA6_ZYMTI	F9WWK6_ZYMTI	F9XLA6	F9WWK6	Uncharacterized protein.	Uncharacterized protein.	0.962
F9XLA6_ZYMTI	F9XIP2_ZYMTI	F9XLA6	F9XIP2	Uncharacterized protein.	Uncharacterized protein.	0.999
F9XLA6_ZYMTI	F9XQ68_ZYMTI	F9XLA6	F9XQ68	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.981
F9XQ68_ZYMTI	F9WWK6_ZYMTI	F9XQ68	F9WWK6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.950
F9XQ68_ZYMTI	F9XIP2_ZYMTI	F9XQ68	F9XIP2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.989
F9XQ68_ZYMTI	F9XLA6_ZYMTI	F9XQ68	F9XLA6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.981