(17 nodes) General transcription initiation factor activity network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9X802_ZYMTI	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (287 aa)
	F9XB14_ZYMTI	Uncharacterized protein. (308 aa)
	F9XH25_ZYMTI	SANT domain-containing protein. (715 aa)
	F9XGZ8_ZYMTI	TAF domain-containing protein. (449 aa)
	F9XDX2_ZYMTI	Uncharacterized protein. (375 aa)
	F9XDI8_ZYMTI	TFA2_Winged_2 domain-containing protein. (245 aa)
	F9XCB4_ZYMTI	Uncharacterized protein. (678 aa)
	F9WXU8_ZYMTI	Uncharacterized protein. (275 aa)
	HAF2401	Transcription initiation factor TFIID, subunit TAF1. (1044 aa)
	F9WZS4_ZYMTI	Uncharacterized protein. (177 aa)
	F9X0B7_ZYMTI	BTB domain-containing protein. (905 aa)
	GTF2401	Transcription factor TFIID complex. (261 aa)
	F9X3M6_ZYMTI	Uncharacterized protein. (730 aa)
	F9X3R3_ZYMTI	Uncharacterized protein. (323 aa)
	F9X605_ZYMTI	TFIIB-type domain-containing protein. (361 aa)
	F9X6Z5_ZYMTI	CBFD_NFYB_HMF domain-containing protein. (165 aa)
	F9X7Q4_ZYMTI	CBFD_NFYB_HMF domain-containing protein. (96 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WXU8_ZYMTI	F9WZS4_ZYMTI	F9WXU8	F9WZS4	Uncharacterized protein.	Uncharacterized protein.	0.940
F9WXU8_ZYMTI	F9X0B7_ZYMTI	F9WXU8	F9X0B7	Uncharacterized protein.	BTB domain-containing protein.	0.868
F9WXU8_ZYMTI	F9X3R3_ZYMTI	F9WXU8	F9X3R3	Uncharacterized protein.	Uncharacterized protein.	0.792
F9WXU8_ZYMTI	F9X605_ZYMTI	F9WXU8	F9X605	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.835
F9WXU8_ZYMTI	F9X802_ZYMTI	F9WXU8	F9X802	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.770
F9WXU8_ZYMTI	F9XDI8_ZYMTI	F9WXU8	F9XDI8	Uncharacterized protein.	TFA2_Winged_2 domain-containing protein.	0.770
F9WXU8_ZYMTI	F9XGZ8_ZYMTI	F9WXU8	F9XGZ8	Uncharacterized protein.	TAF domain-containing protein.	0.999
F9WXU8_ZYMTI	GTF2401	F9WXU8	F9X2J7	Uncharacterized protein.	Transcription factor TFIID complex.	0.940
F9WXU8_ZYMTI	HAF2401	F9WXU8	F9WYB3	Uncharacterized protein.	Transcription initiation factor TFIID, subunit TAF1.	0.996
F9WZS4_ZYMTI	F9WXU8_ZYMTI	F9WZS4	F9WXU8	Uncharacterized protein.	Uncharacterized protein.	0.940
F9WZS4_ZYMTI	F9X3M6_ZYMTI	F9WZS4	F9X3M6	Uncharacterized protein.	Uncharacterized protein.	0.952
F9WZS4_ZYMTI	F9X3R3_ZYMTI	F9WZS4	F9X3R3	Uncharacterized protein.	Uncharacterized protein.	0.889
F9WZS4_ZYMTI	F9X605_ZYMTI	F9WZS4	F9X605	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.953
F9WZS4_ZYMTI	F9X6Z5_ZYMTI	F9WZS4	F9X6Z5	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.860
F9WZS4_ZYMTI	F9X7Q4_ZYMTI	F9WZS4	F9X7Q4	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.873
F9WZS4_ZYMTI	F9X802_ZYMTI	F9WZS4	F9X802	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.703
F9WZS4_ZYMTI	F9XB14_ZYMTI	F9WZS4	F9XB14	Uncharacterized protein.	Uncharacterized protein.	0.439
F9WZS4_ZYMTI	F9XCB4_ZYMTI	F9WZS4	F9XCB4	Uncharacterized protein.	Uncharacterized protein.	0.757
F9WZS4_ZYMTI	F9XDI8_ZYMTI	F9WZS4	F9XDI8	Uncharacterized protein.	TFA2_Winged_2 domain-containing protein.	0.703
F9WZS4_ZYMTI	F9XGZ8_ZYMTI	F9WZS4	F9XGZ8	Uncharacterized protein.	TAF domain-containing protein.	0.951