(7 nodes) Nucleolar ribonuclease P complex network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9XJR2_ZYMTI	Uncharacterized protein. (192 aa)
	F9XIY6_ZYMTI	Uncharacterized protein. (329 aa)
	F9XPL1_ZYMTI	Uncharacterized protein. (167 aa)
	F9XC05_ZYMTI	Uncharacterized protein. (331 aa)
	F9XBL2_ZYMTI	Uncharacterized protein. (872 aa)
	F9XAR4_ZYMTI	Uncharacterized protein. (204 aa)
	F9XNB3_ZYMTI	Uncharacterized protein. (248 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9XAR4_ZYMTI	F9XBL2_ZYMTI	F9XAR4	F9XBL2	Uncharacterized protein.	Uncharacterized protein.	0.990
F9XAR4_ZYMTI	F9XC05_ZYMTI	F9XAR4	F9XC05	Uncharacterized protein.	Uncharacterized protein.	0.999
F9XAR4_ZYMTI	F9XIY6_ZYMTI	F9XAR4	F9XIY6	Uncharacterized protein.	Uncharacterized protein.	0.681
F9XAR4_ZYMTI	F9XJR2_ZYMTI	F9XAR4	F9XJR2	Uncharacterized protein.	Uncharacterized protein.	0.999
F9XAR4_ZYMTI	F9XNB3_ZYMTI	F9XAR4	F9XNB3	Uncharacterized protein.	Uncharacterized protein.	0.940
F9XAR4_ZYMTI	F9XPL1_ZYMTI	F9XAR4	F9XPL1	Uncharacterized protein.	Uncharacterized protein.	0.982
F9XBL2_ZYMTI	F9XAR4_ZYMTI	F9XBL2	F9XAR4	Uncharacterized protein.	Uncharacterized protein.	0.990
F9XBL2_ZYMTI	F9XC05_ZYMTI	F9XBL2	F9XC05	Uncharacterized protein.	Uncharacterized protein.	0.991
F9XBL2_ZYMTI	F9XIY6_ZYMTI	F9XBL2	F9XIY6	Uncharacterized protein.	Uncharacterized protein.	0.720
F9XBL2_ZYMTI	F9XJR2_ZYMTI	F9XBL2	F9XJR2	Uncharacterized protein.	Uncharacterized protein.	0.990
F9XBL2_ZYMTI	F9XPL1_ZYMTI	F9XBL2	F9XPL1	Uncharacterized protein.	Uncharacterized protein.	0.987
F9XC05_ZYMTI	F9XAR4_ZYMTI	F9XC05	F9XAR4	Uncharacterized protein.	Uncharacterized protein.	0.999
F9XC05_ZYMTI	F9XBL2_ZYMTI	F9XC05	F9XBL2	Uncharacterized protein.	Uncharacterized protein.	0.991
F9XC05_ZYMTI	F9XIY6_ZYMTI	F9XC05	F9XIY6	Uncharacterized protein.	Uncharacterized protein.	0.871
F9XC05_ZYMTI	F9XJR2_ZYMTI	F9XC05	F9XJR2	Uncharacterized protein.	Uncharacterized protein.	0.999
F9XC05_ZYMTI	F9XNB3_ZYMTI	F9XC05	F9XNB3	Uncharacterized protein.	Uncharacterized protein.	0.916
F9XC05_ZYMTI	F9XPL1_ZYMTI	F9XC05	F9XPL1	Uncharacterized protein.	Uncharacterized protein.	0.998
F9XIY6_ZYMTI	F9XAR4_ZYMTI	F9XIY6	F9XAR4	Uncharacterized protein.	Uncharacterized protein.	0.681
F9XIY6_ZYMTI	F9XBL2_ZYMTI	F9XIY6	F9XBL2	Uncharacterized protein.	Uncharacterized protein.	0.720
F9XIY6_ZYMTI	F9XC05_ZYMTI	F9XIY6	F9XC05	Uncharacterized protein.	Uncharacterized protein.	0.871