(8 nodes) Exon-exon junction complex network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9X019_ZYMTI	Uncharacterized protein. (427 aa)
	F9WYC9_ZYMTI	Uncharacterized protein. (156 aa)
	F9WZL0_ZYMTI	RRM domain-containing protein. (158 aa)
	F9XLM6_ZYMTI	Uncharacterized protein. (1147 aa)
	F9XKC7_ZYMTI	RRM domain-containing protein. (573 aa)
	F9XD99_ZYMTI	Mago-bind domain-containing protein. (176 aa)
	F9X2U3_ZYMTI	Uncharacterized protein. (446 aa)
	F9X183_ZYMTI	Uncharacterized protein. (680 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WYC9_ZYMTI	F9WZL0_ZYMTI	F9WYC9	F9WZL0	Uncharacterized protein.	RRM domain-containing protein.	0.999
F9WYC9_ZYMTI	F9X183_ZYMTI	F9WYC9	F9X183	Uncharacterized protein.	Uncharacterized protein.	0.688
F9WYC9_ZYMTI	F9XD99_ZYMTI	F9WYC9	F9XD99	Uncharacterized protein.	Mago-bind domain-containing protein.	0.993
F9WYC9_ZYMTI	F9XKC7_ZYMTI	F9WYC9	F9XKC7	Uncharacterized protein.	RRM domain-containing protein.	0.993
F9WYC9_ZYMTI	F9XLM6_ZYMTI	F9WYC9	F9XLM6	Uncharacterized protein.	Uncharacterized protein.	0.858
F9WZL0_ZYMTI	F9WYC9_ZYMTI	F9WZL0	F9WYC9	RRM domain-containing protein.	Uncharacterized protein.	0.999
F9WZL0_ZYMTI	F9X183_ZYMTI	F9WZL0	F9X183	RRM domain-containing protein.	Uncharacterized protein.	0.910
F9WZL0_ZYMTI	F9XD99_ZYMTI	F9WZL0	F9XD99	RRM domain-containing protein.	Mago-bind domain-containing protein.	0.999
F9WZL0_ZYMTI	F9XKC7_ZYMTI	F9WZL0	F9XKC7	RRM domain-containing protein.	RRM domain-containing protein.	0.967
F9WZL0_ZYMTI	F9XLM6_ZYMTI	F9WZL0	F9XLM6	RRM domain-containing protein.	Uncharacterized protein.	0.991
F9X183_ZYMTI	F9WYC9_ZYMTI	F9X183	F9WYC9	Uncharacterized protein.	Uncharacterized protein.	0.688
F9X183_ZYMTI	F9WZL0_ZYMTI	F9X183	F9WZL0	Uncharacterized protein.	RRM domain-containing protein.	0.910
F9X183_ZYMTI	F9XKC7_ZYMTI	F9X183	F9XKC7	Uncharacterized protein.	RRM domain-containing protein.	0.993
F9X183_ZYMTI	F9XLM6_ZYMTI	F9X183	F9XLM6	Uncharacterized protein.	Uncharacterized protein.	0.992
F9XD99_ZYMTI	F9WYC9_ZYMTI	F9XD99	F9WYC9	Mago-bind domain-containing protein.	Uncharacterized protein.	0.993
F9XD99_ZYMTI	F9WZL0_ZYMTI	F9XD99	F9WZL0	Mago-bind domain-containing protein.	RRM domain-containing protein.	0.999
F9XD99_ZYMTI	F9XKC7_ZYMTI	F9XD99	F9XKC7	Mago-bind domain-containing protein.	RRM domain-containing protein.	0.469
F9XD99_ZYMTI	F9XLM6_ZYMTI	F9XD99	F9XLM6	Mago-bind domain-containing protein.	Uncharacterized protein.	0.410
F9XKC7_ZYMTI	F9WYC9_ZYMTI	F9XKC7	F9WYC9	RRM domain-containing protein.	Uncharacterized protein.	0.993
F9XKC7_ZYMTI	F9WZL0_ZYMTI	F9XKC7	F9WZL0	RRM domain-containing protein.	RRM domain-containing protein.	0.967