(4 nodes) Nuclear exosome focus network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9X649_ZYMTI	Uncharacterized protein. (174 aa)
	F9XGG0_ZYMTI	Uncharacterized protein. (434 aa)
	F9XLA4_ZYMTI	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (559 aa)
	F9XPE0_ZYMTI	RRM domain-containing protein. (199 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9X649_ZYMTI	F9XGG0_ZYMTI	F9X649	F9XGG0	Uncharacterized protein.	Uncharacterized protein.	0.577
F9X649_ZYMTI	F9XLA4_ZYMTI	F9X649	F9XLA4	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.457
F9XGG0_ZYMTI	F9X649_ZYMTI	F9XGG0	F9X649	Uncharacterized protein.	Uncharacterized protein.	0.577
F9XGG0_ZYMTI	F9XLA4_ZYMTI	F9XGG0	F9XLA4	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.998
F9XGG0_ZYMTI	F9XPE0_ZYMTI	F9XGG0	F9XPE0	Uncharacterized protein.	RRM domain-containing protein.	0.660
F9XLA4_ZYMTI	F9X649_ZYMTI	F9XLA4	F9X649	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.457
F9XLA4_ZYMTI	F9XGG0_ZYMTI	F9XLA4	F9XGG0	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.998
F9XLA4_ZYMTI	F9XPE0_ZYMTI	F9XLA4	F9XPE0	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	RRM domain-containing protein.	0.965
F9XPE0_ZYMTI	F9XGG0_ZYMTI	F9XPE0	F9XGG0	RRM domain-containing protein.	Uncharacterized protein.	0.660
F9XPE0_ZYMTI	F9XLA4_ZYMTI	F9XPE0	F9XLA4	RRM domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.965