(69 nodes) Zinc finger, RING-type network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9WZU4_ZYMTI	Uncharacterized protein. (1574 aa)
	F9X0Y9_ZYMTI	RING-type domain-containing protein. (82 aa)
	F9X1A2_ZYMTI	RING-type domain-containing protein. (295 aa)
	F9X256_ZYMTI	RING-type domain-containing protein. (817 aa)
	F9X354_ZYMTI	DNA repair protein, RAD5. (1123 aa)
	F9X393_ZYMTI	RBR-type E3 ubiquitin transferase. (601 aa)
	F9X3G1_ZYMTI	RING-type domain-containing protein. (551 aa)
	F9X440_ZYMTI	RING-type domain-containing protein. (329 aa)
	F9X455_ZYMTI	Uncharacterized protein. (517 aa)
	F9X4S1_ZYMTI	Uncharacterized protein. (207 aa)
	F9X588_ZYMTI	Uncharacterized protein. (693 aa)
	F9X5A7_ZYMTI	RING-type domain-containing protein. (969 aa)
	F9X5J1_ZYMTI	Uncharacterized protein. (1167 aa)
	F9X5M7_ZYMTI	RBR-type E3 ubiquitin transferase. (295 aa)
	F9XE68_ZYMTI	RBR-type E3 ubiquitin transferase. (530 aa)
	F9XDB9_ZYMTI	RING-type domain-containing protein. (277 aa)
	F9XBU3_ZYMTI	Uncharacterized protein. (1072 aa)
	F9XB12_ZYMTI	RING-type domain-containing protein. (150 aa)
	F9XAD2_ZYMTI	RING-type domain-containing protein. (422 aa)
	F9XA01_ZYMTI	RING-type domain-containing protein. (321 aa)
	MOT2	General negative regulator of transcription subunit 4. (1473 aa)
	F9X9L8_ZYMTI	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs. (569 aa)
	F9X9I4_ZYMTI	SNF2 family DNA-dependent ATPase domain-containing protein. (916 aa)
	F9X8B8_ZYMTI	LisH domain-containing protein. (404 aa)
	F9X7V0_ZYMTI	Uncharacterized protein. (319 aa)
	F9X6Q7_ZYMTI	RING-type domain-containing protein. (365 aa)
	F9X674_ZYMTI	RING-CH-type domain-containing protein. (1591 aa)
	F9XP05_ZYMTI	Uncharacterized protein. (297 aa)
	F9XN85_ZYMTI	RING-type domain-containing protein. (773 aa)
	F9XM38_ZYMTI	Uncharacterized protein. (480 aa)
	F9XL86_ZYMTI	RING-type domain-containing protein. (354 aa)
	F9XL85_ZYMTI	RING-type domain-containing protein. (239 aa)
	F9XKU7_ZYMTI	RING-type domain-containing protein. (55 aa)
	F9XKH0_ZYMTI	RING-type domain-containing protein. (204 aa)
	F9XJE3_ZYMTI	E3 ubiquitin-protein ligase PEP5. (984 aa)
	F9XIY4_ZYMTI	SNF2 family DNA-dependent ATPase domain-containing protein. (643 aa)
	F9XIX8_ZYMTI	Uncharacterized protein. (411 aa)
	F9XIP6_ZYMTI	RAD16 class DNA helicase and DNA-dependent ATPase. (971 aa)
	F9XHY3_ZYMTI	RING-type domain-containing protein. (118 aa)
	F9XH24_ZYMTI	E3 ubiquitin protein ligase. (734 aa)
	F9XGR1_ZYMTI	RING-type domain-containing protein. (513 aa)
	F9XGR0_ZYMTI	RING-type domain-containing protein. (356 aa)
	F9XGQ9_ZYMTI	RING-type domain-containing protein. (204 aa)
	F9XGQ8_ZYMTI	RING-type domain-containing protein. (199 aa)
	F9XGQ4_ZYMTI	RING-type domain-containing protein. (459 aa)
	F9XGQ2_ZYMTI	RING-type domain-containing protein. (308 aa)
	F9XGQ1_ZYMTI	RING-type domain-containing protein. (844 aa)
	F9XGP9_ZYMTI	RING-type domain-containing protein. (191 aa)
	F9XGP8_ZYMTI	RING-type domain-containing protein. (438 aa)
	F9XGP7_ZYMTI	RING-type domain-containing protein. (364 aa)
	F9XGP6_ZYMTI	RING-type domain-containing protein. (245 aa)
	F9XGP5_ZYMTI	RING-type domain-containing protein. (313 aa)
	F9XG60_ZYMTI	Uncharacterized protein. (1216 aa)
	F9XG46_ZYMTI	RING-type domain-containing protein. (394 aa)
	F9XFQ8_ZYMTI	RING-type domain-containing protein. (315 aa)
	F9XEN5_ZYMTI	RING-type domain-containing protein. (526 aa)
	F9XEJ9_ZYMTI	RING-type domain-containing protein. (1577 aa)
	F9XQG3_ZYMTI	RING-type domain-containing protein. (61 aa)
	F9XQG0_ZYMTI	RING-type domain-containing protein. (53 aa)
	F9XQF9_ZYMTI	RING-type domain-containing protein. (472 aa)
	F9XPZ9_ZYMTI	RING-type domain-containing protein. (860 aa)
	F9XPY1_ZYMTI	RING-type domain-containing protein. (745 aa)
	F9XPN9_ZYMTI	Uncharacterized protein. (311 aa)
	F9WW82_ZYMTI	Uncharacterized protein. (788 aa)
	F9WXH7_ZYMTI	RING-type domain-containing protein. (555 aa)
	F9WXI1_ZYMTI	RING-type domain-containing protein. (560 aa)
	F9WXL5_ZYMTI	RING-type domain-containing protein. (139 aa)
	F9WXU0_ZYMTI	RING-type domain-containing protein. (542 aa)
	F9WZJ3_ZYMTI	RING-type domain-containing protein. (103 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WW82_ZYMTI	F9XIX8_ZYMTI	F9WW82	F9XIX8	Uncharacterized protein.	Uncharacterized protein.	0.571
F9X0Y9_ZYMTI	F9XHY3_ZYMTI	F9X0Y9	F9XHY3	RING-type domain-containing protein.	RING-type domain-containing protein.	0.660
F9X354_ZYMTI	F9XIX8_ZYMTI	F9X354	F9XIX8	DNA repair protein, RAD5.	Uncharacterized protein.	0.879
F9X393_ZYMTI	F9XE68_ZYMTI	F9X393	F9XE68	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.514
F9X5A7_ZYMTI	F9XHY3_ZYMTI	F9X5A7	F9XHY3	RING-type domain-containing protein.	RING-type domain-containing protein.	0.565
F9X5M7_ZYMTI	F9XHY3_ZYMTI	F9X5M7	F9XHY3	RBR-type E3 ubiquitin transferase.	RING-type domain-containing protein.	0.475
F9X674_ZYMTI	F9XN85_ZYMTI	F9X674	F9XN85	RING-CH-type domain-containing protein.	RING-type domain-containing protein.	0.820
F9X9I4_ZYMTI	F9XIX8_ZYMTI	F9X9I4	F9XIX8	SNF2 family DNA-dependent ATPase domain-containing protein.	Uncharacterized protein.	0.571
F9XA01_ZYMTI	F9XHY3_ZYMTI	F9XA01	F9XHY3	RING-type domain-containing protein.	RING-type domain-containing protein.	0.717
F9XE68_ZYMTI	F9X393_ZYMTI	F9XE68	F9X393	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.514
F9XE68_ZYMTI	F9XHY3_ZYMTI	F9XE68	F9XHY3	RBR-type E3 ubiquitin transferase.	RING-type domain-containing protein.	0.833
F9XEJ9_ZYMTI	MOT2	F9XEJ9	F9X9Q4	RING-type domain-containing protein.	General negative regulator of transcription subunit 4.	0.611
F9XH24_ZYMTI	F9XIX8_ZYMTI	F9XH24	F9XIX8	E3 ubiquitin protein ligase.	Uncharacterized protein.	0.461
F9XHY3_ZYMTI	F9X0Y9_ZYMTI	F9XHY3	F9X0Y9	RING-type domain-containing protein.	RING-type domain-containing protein.	0.660
F9XHY3_ZYMTI	F9X5A7_ZYMTI	F9XHY3	F9X5A7	RING-type domain-containing protein.	RING-type domain-containing protein.	0.565
F9XHY3_ZYMTI	F9X5M7_ZYMTI	F9XHY3	F9X5M7	RING-type domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.475
F9XHY3_ZYMTI	F9XA01_ZYMTI	F9XHY3	F9XA01	RING-type domain-containing protein.	RING-type domain-containing protein.	0.717
F9XHY3_ZYMTI	F9XE68_ZYMTI	F9XHY3	F9XE68	RING-type domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.833
F9XHY3_ZYMTI	F9XIX8_ZYMTI	F9XHY3	F9XIX8	RING-type domain-containing protein.	Uncharacterized protein.	0.741
F9XHY3_ZYMTI	F9XQF9_ZYMTI	F9XHY3	F9XQF9	RING-type domain-containing protein.	RING-type domain-containing protein.	0.430