(6 nodes) DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9XG03_ZYMTI	Uncharacterized protein. (572 aa)
	F9XKQ1_ZYMTI	AAA domain-containing protein. (351 aa)
	F9XI34_ZYMTI	AAA domain-containing protein. (460 aa)
	F9X078_ZYMTI	Replication factor C subunit 1. (1078 aa)
	F9X9A0_ZYMTI	AAA domain-containing protein. (408 aa)
	F9XA66_ZYMTI	AAA domain-containing protein. (357 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9X078_ZYMTI	F9X9A0_ZYMTI	F9X078	F9X9A0	Replication factor C subunit 1.	AAA domain-containing protein.	0.969
F9X078_ZYMTI	F9XA66_ZYMTI	F9X078	F9XA66	Replication factor C subunit 1.	AAA domain-containing protein.	0.961
F9X078_ZYMTI	F9XI34_ZYMTI	F9X078	F9XI34	Replication factor C subunit 1.	AAA domain-containing protein.	0.968
F9X078_ZYMTI	F9XKQ1_ZYMTI	F9X078	F9XKQ1	Replication factor C subunit 1.	AAA domain-containing protein.	0.948
F9X9A0_ZYMTI	F9X078_ZYMTI	F9X9A0	F9X078	AAA domain-containing protein.	Replication factor C subunit 1.	0.969
F9X9A0_ZYMTI	F9XA66_ZYMTI	F9X9A0	F9XA66	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9X9A0_ZYMTI	F9XI34_ZYMTI	F9X9A0	F9XI34	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9X9A0_ZYMTI	F9XKQ1_ZYMTI	F9X9A0	F9XKQ1	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XA66_ZYMTI	F9X078_ZYMTI	F9XA66	F9X078	AAA domain-containing protein.	Replication factor C subunit 1.	0.961
F9XA66_ZYMTI	F9X9A0_ZYMTI	F9XA66	F9X9A0	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XA66_ZYMTI	F9XI34_ZYMTI	F9XA66	F9XI34	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XA66_ZYMTI	F9XKQ1_ZYMTI	F9XA66	F9XKQ1	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XI34_ZYMTI	F9X078_ZYMTI	F9XI34	F9X078	AAA domain-containing protein.	Replication factor C subunit 1.	0.968
F9XI34_ZYMTI	F9X9A0_ZYMTI	F9XI34	F9X9A0	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XI34_ZYMTI	F9XA66_ZYMTI	F9XI34	F9XA66	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XI34_ZYMTI	F9XKQ1_ZYMTI	F9XI34	F9XKQ1	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XKQ1_ZYMTI	F9X078_ZYMTI	F9XKQ1	F9X078	AAA domain-containing protein.	Replication factor C subunit 1.	0.948
F9XKQ1_ZYMTI	F9X9A0_ZYMTI	F9XKQ1	F9X9A0	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XKQ1_ZYMTI	F9XA66_ZYMTI	F9XKQ1	F9XA66	AAA domain-containing protein.	AAA domain-containing protein.	0.999
F9XKQ1_ZYMTI	F9XI34_ZYMTI	F9XKQ1	F9XI34	AAA domain-containing protein.	AAA domain-containing protein.	0.999