(18 nodes) LSM domain superfamily network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9XA97_ZYMTI	Sm domain-containing protein. (99 aa)
	F9XB57_ZYMTI	Small nuclear ribonucleoprotein G. (93 aa)
	F9XCB8_ZYMTI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (99 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (81 aa)
	F9XFW1_ZYMTI	Sm domain-containing protein. (207 aa)
	F9XG58_ZYMTI	Sm domain-containing protein. (98 aa)
	F9XJD9_ZYMTI	Sm domain-containing protein. (89 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (129 aa)
	F9XN79_ZYMTI	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (133 aa)
	F9XLF5_ZYMTI	Small nuclear ribonucleoprotein Sm D2. (122 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (132 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (89 aa)
	F9X0Q3_ZYMTI	Mechanosensitive ion channel protein. (1025 aa)
	F9X1C9_ZYMTI	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	F9X1U6_ZYMTI	Small nuclear ribonucleoprotein Sm D3. (119 aa)
	F9X266_ZYMTI	Uncharacterized protein. (590 aa)
	F9X381_ZYMTI	Sm domain-containing protein. (83 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9X1C9_ZYMTI	F9X1U6_ZYMTI	F9X1C9	F9X1U6	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.895
F9X1C9_ZYMTI	F9X266_ZYMTI	F9X1C9	F9X266	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.466
F9X1C9_ZYMTI	F9X381_ZYMTI	F9X1C9	F9X381	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
F9X1C9_ZYMTI	F9XA97_ZYMTI	F9X1C9	F9XA97	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.738
F9X1C9_ZYMTI	F9XB57_ZYMTI	F9X1C9	F9XB57	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.973
F9X1C9_ZYMTI	F9XCB8_ZYMTI	F9X1C9	F9XCB8	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.993
F9X1C9_ZYMTI	F9XFW1_ZYMTI	F9X1C9	F9XFW1	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.961
F9X1C9_ZYMTI	F9XG58_ZYMTI	F9X1C9	F9XG58	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
F9X1C9_ZYMTI	F9XJD9_ZYMTI	F9X1C9	F9XJD9	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.997
F9X1C9_ZYMTI	F9XLF5_ZYMTI	F9X1C9	F9XLF5	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.999
F9X1C9_ZYMTI	F9XN79_ZYMTI	F9X1C9	F9XN79	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.983
F9X1C9_ZYMTI	LSM1	F9X1C9	F9WY63	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.999
F9X1C9_ZYMTI	LSM3	F9X1C9	F9X3T5	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
F9X1C9_ZYMTI	LSM4	F9X1C9	F9XL50	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
F9X1C9_ZYMTI	LSM5	F9X1C9	F9XF32	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
F9X1C9_ZYMTI	LSM8	F9X1C9	F9WYI5	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
F9X1U6_ZYMTI	F9X1C9_ZYMTI	F9X1U6	F9X1C9	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.895
F9X1U6_ZYMTI	F9X381_ZYMTI	F9X1U6	F9X381	Small nuclear ribonucleoprotein Sm D3.	Sm domain-containing protein.	0.939
F9X1U6_ZYMTI	F9XA97_ZYMTI	F9X1U6	F9XA97	Small nuclear ribonucleoprotein Sm D3.	Sm domain-containing protein.	0.885
F9X1U6_ZYMTI	F9XB57_ZYMTI	F9X1U6	F9XB57	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein G.	0.998