(25 nodes) Zinc finger, RING-type, conserved site network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9WXT8_ZYMTI	RBR-type E3 ubiquitin transferase. (457 aa)
	F9WZU4_ZYMTI	Uncharacterized protein. (1574 aa)
	F9X393_ZYMTI	RBR-type E3 ubiquitin transferase. (601 aa)
	F9X455_ZYMTI	Uncharacterized protein. (517 aa)
	F9X4B3_ZYMTI	Uncharacterized protein. (1243 aa)
	F9X7V0_ZYMTI	Uncharacterized protein. (319 aa)
	F9XA01_ZYMTI	RING-type domain-containing protein. (321 aa)
	F9XBU3_ZYMTI	Uncharacterized protein. (1072 aa)
	F9XC64_ZYMTI	Uncharacterized protein. (425 aa)
	F9XE68_ZYMTI	RBR-type E3 ubiquitin transferase. (530 aa)
	F9XEJ2_ZYMTI	Uncharacterized protein. (1839 aa)
	F9XEN5_ZYMTI	RING-type domain-containing protein. (526 aa)
	F9XG46_ZYMTI	RING-type domain-containing protein. (394 aa)
	F9XGQ1_ZYMTI	RING-type domain-containing protein. (844 aa)
	F9XGQ8_ZYMTI	RING-type domain-containing protein. (199 aa)
	F9XGR1_ZYMTI	RING-type domain-containing protein. (513 aa)
	F9XH24_ZYMTI	E3 ubiquitin protein ligase. (734 aa)
	F9XIP6_ZYMTI	RAD16 class DNA helicase and DNA-dependent ATPase. (971 aa)
	F9XIX8_ZYMTI	Uncharacterized protein. (411 aa)
	F9XIY4_ZYMTI	SNF2 family DNA-dependent ATPase domain-containing protein. (643 aa)
	F9XKH0_ZYMTI	RING-type domain-containing protein. (204 aa)
	F9XL85_ZYMTI	RING-type domain-containing protein. (239 aa)
	F9XL86_ZYMTI	RING-type domain-containing protein. (354 aa)
	F9XPY1_ZYMTI	RING-type domain-containing protein. (745 aa)
	F9XQN9_ZYMTI	PNPLA domain-containing protein. (981 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9X393_ZYMTI	F9XE68_ZYMTI	F9X393	F9XE68	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.514
F9X4B3_ZYMTI	F9X7V0_ZYMTI	F9X4B3	F9X7V0	Uncharacterized protein.	Uncharacterized protein.	0.991
F9X7V0_ZYMTI	F9X4B3_ZYMTI	F9X7V0	F9X4B3	Uncharacterized protein.	Uncharacterized protein.	0.991
F9XE68_ZYMTI	F9X393_ZYMTI	F9XE68	F9X393	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.514
F9XEJ2_ZYMTI	F9XIX8_ZYMTI	F9XEJ2	F9XIX8	Uncharacterized protein.	Uncharacterized protein.	0.669
F9XH24_ZYMTI	F9XIX8_ZYMTI	F9XH24	F9XIX8	E3 ubiquitin protein ligase.	Uncharacterized protein.	0.461
F9XIX8_ZYMTI	F9XEJ2_ZYMTI	F9XIX8	F9XEJ2	Uncharacterized protein.	Uncharacterized protein.	0.669
F9XIX8_ZYMTI	F9XH24_ZYMTI	F9XIX8	F9XH24	Uncharacterized protein.	E3 ubiquitin protein ligase.	0.461
F9XIX8_ZYMTI	F9XIY4_ZYMTI	F9XIX8	F9XIY4	Uncharacterized protein.	SNF2 family DNA-dependent ATPase domain-containing protein.	0.451
F9XIY4_ZYMTI	F9XIX8_ZYMTI	F9XIY4	F9XIX8	SNF2 family DNA-dependent ATPase domain-containing protein.	Uncharacterized protein.	0.451