(15 nodes) AAA ATPase, AAA+ lid domain network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9X4F3_ZYMTI	AAA domain-containing protein; Belongs to the AAA ATPase family. (463 aa)
	F9X4C5_ZYMTI	Uncharacterized protein; Belongs to the AAA ATPase family. (822 aa)
	F9X3N0_ZYMTI	Uncharacterized protein; Belongs to the AAA ATPase family. (676 aa)
	F9WYH8_ZYMTI	AAA domain-containing protein; Belongs to the AAA ATPase family. (294 aa)
	F9WWU8_ZYMTI	Uncharacterized protein; Belongs to the AAA ATPase family. (690 aa)
	PATPA2401	26S proteasome regulatory complex, ATPase RPT4; Belongs to the AAA ATPase family. (364 aa)
	F9XI48_ZYMTI	AAA domain-containing protein; Belongs to the AAA ATPase family. (463 aa)
	F9XEI9_ZYMTI	Uncharacterized protein. (741 aa)
	F9XND5_ZYMTI	AAA domain-containing protein. (743 aa)
	F9XES1_ZYMTI	Uncharacterized protein. (1227 aa)
	F9XB69_ZYMTI	AAA domain-containing protein; Belongs to the AAA ATPase family. (432 aa)
	F9XA00_ZYMTI	AAA domain-containing protein. (918 aa)
	PATPB2401	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family. (389 aa)
	BRAT2401	Bromodomain-containing AAA ATPase protein. (1527 aa)
	F9X566_ZYMTI	AAA domain-containing protein. (1214 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRAT2401	F9X4F3_ZYMTI	F9X8S6	F9X4F3	Bromodomain-containing AAA ATPase protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.563
BRAT2401	PATPA2401	F9X8S6	F9XFQ4	Bromodomain-containing AAA ATPase protein.	26S proteasome regulatory complex, ATPase RPT4; Belongs to the AAA ATPase family.	0.540
F9X3N0_ZYMTI	F9X4F3_ZYMTI	F9X3N0	F9X4F3	Uncharacterized protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.619
F9X3N0_ZYMTI	F9XI48_ZYMTI	F9X3N0	F9XI48	Uncharacterized protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.569
F9X3N0_ZYMTI	PATPA2401	F9X3N0	F9XFQ4	Uncharacterized protein; Belongs to the AAA ATPase family.	26S proteasome regulatory complex, ATPase RPT4; Belongs to the AAA ATPase family.	0.492
F9X3N0_ZYMTI	PATPB2401	F9X3N0	F9X6X9	Uncharacterized protein; Belongs to the AAA ATPase family.	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family.	0.547
F9X4C5_ZYMTI	F9X4F3_ZYMTI	F9X4C5	F9X4F3	Uncharacterized protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.602
F9X4C5_ZYMTI	F9XI48_ZYMTI	F9X4C5	F9XI48	Uncharacterized protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.551
F9X4C5_ZYMTI	PATPA2401	F9X4C5	F9XFQ4	Uncharacterized protein; Belongs to the AAA ATPase family.	26S proteasome regulatory complex, ATPase RPT4; Belongs to the AAA ATPase family.	0.476
F9X4C5_ZYMTI	PATPB2401	F9X4C5	F9X6X9	Uncharacterized protein; Belongs to the AAA ATPase family.	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family.	0.535
F9X4F3_ZYMTI	BRAT2401	F9X4F3	F9X8S6	AAA domain-containing protein; Belongs to the AAA ATPase family.	Bromodomain-containing AAA ATPase protein.	0.563
F9X4F3_ZYMTI	F9X3N0_ZYMTI	F9X4F3	F9X3N0	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.619
F9X4F3_ZYMTI	F9X4C5_ZYMTI	F9X4F3	F9X4C5	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.602
F9X4F3_ZYMTI	F9XI48_ZYMTI	F9X4F3	F9XI48	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
F9X4F3_ZYMTI	PATPA2401	F9X4F3	F9XFQ4	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S proteasome regulatory complex, ATPase RPT4; Belongs to the AAA ATPase family.	0.999
F9X4F3_ZYMTI	PATPB2401	F9X4F3	F9X6X9	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S proteasome regulatory complex, ATPase RPT6; Belongs to the AAA ATPase family.	0.999
F9X566_ZYMTI	F9XA00_ZYMTI	F9X566	F9XA00	AAA domain-containing protein.	AAA domain-containing protein.	0.433
F9XA00_ZYMTI	F9X566_ZYMTI	F9XA00	F9X566	AAA domain-containing protein.	AAA domain-containing protein.	0.433
F9XI48_ZYMTI	F9X3N0_ZYMTI	F9XI48	F9X3N0	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.569
F9XI48_ZYMTI	F9X4C5_ZYMTI	F9XI48	F9X4C5	AAA domain-containing protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.551