(7 nodes) SCF(Skp2)-mediated degradation of p27/p21 network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9XKE6_ZYMTI	Uncharacterized protein. (228 aa)
	F9XK23_ZYMTI	Uncharacterized protein. (370 aa)
	F9XDN2_ZYMTI	Ubiquitin-like domain-containing protein. (155 aa)
	F9XCK2_ZYMTI	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (114 aa)
	F9X0E2_ZYMTI	BZIP domain-containing protein. (278 aa)
	F9WXR8_ZYMTI	Uncharacterized protein. (384 aa)
	F9X0E3_ZYMTI	CIA30 domain-containing protein. (274 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WXR8_ZYMTI	F9XCK2_ZYMTI	F9WXR8	F9XCK2	Uncharacterized protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.577
F9WXR8_ZYMTI	F9XK23_ZYMTI	F9WXR8	F9XK23	Uncharacterized protein.	Uncharacterized protein.	0.412
F9X0E2_ZYMTI	F9XCK2_ZYMTI	F9X0E2	F9XCK2	BZIP domain-containing protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.619
F9X0E2_ZYMTI	F9XK23_ZYMTI	F9X0E2	F9XK23	BZIP domain-containing protein.	Uncharacterized protein.	0.488
F9X0E2_ZYMTI	F9XKE6_ZYMTI	F9X0E2	F9XKE6	BZIP domain-containing protein.	Uncharacterized protein.	0.557
F9X0E3_ZYMTI	F9XCK2_ZYMTI	F9X0E3	F9XCK2	CIA30 domain-containing protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.619
F9X0E3_ZYMTI	F9XK23_ZYMTI	F9X0E3	F9XK23	CIA30 domain-containing protein.	Uncharacterized protein.	0.488
F9X0E3_ZYMTI	F9XKE6_ZYMTI	F9X0E3	F9XKE6	CIA30 domain-containing protein.	Uncharacterized protein.	0.557
F9XCK2_ZYMTI	F9WXR8_ZYMTI	F9XCK2	F9WXR8	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Uncharacterized protein.	0.577
F9XCK2_ZYMTI	F9X0E2_ZYMTI	F9XCK2	F9X0E2	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	BZIP domain-containing protein.	0.619
F9XCK2_ZYMTI	F9X0E3_ZYMTI	F9XCK2	F9X0E3	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	CIA30 domain-containing protein.	0.619
F9XCK2_ZYMTI	F9XDN2_ZYMTI	F9XCK2	F9XDN2	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Ubiquitin-like domain-containing protein.	0.619
F9XCK2_ZYMTI	F9XKE6_ZYMTI	F9XCK2	F9XKE6	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Uncharacterized protein.	0.882
F9XDN2_ZYMTI	F9XCK2_ZYMTI	F9XDN2	F9XCK2	Ubiquitin-like domain-containing protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.619
F9XDN2_ZYMTI	F9XK23_ZYMTI	F9XDN2	F9XK23	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.488
F9XDN2_ZYMTI	F9XKE6_ZYMTI	F9XDN2	F9XKE6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.557
F9XK23_ZYMTI	F9WXR8_ZYMTI	F9XK23	F9WXR8	Uncharacterized protein.	Uncharacterized protein.	0.412
F9XK23_ZYMTI	F9X0E2_ZYMTI	F9XK23	F9X0E2	Uncharacterized protein.	BZIP domain-containing protein.	0.488
F9XK23_ZYMTI	F9X0E3_ZYMTI	F9XK23	F9X0E3	Uncharacterized protein.	CIA30 domain-containing protein.	0.488
F9XK23_ZYMTI	F9XDN2_ZYMTI	F9XK23	F9XDN2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.488