(37 nodes) HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA) network (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F9XDN2_ZYMTI	Ubiquitin-like domain-containing protein. (155 aa)
	F9XDU4_ZYMTI	AA_TRNA_LIGASE_II domain-containing protein. (577 aa)
	F9XRL8_ZYMTI	Helicase ATP-binding domain-containing protein. (299 aa)
	F9XR82_ZYMTI	Uncharacterized protein. (398 aa)
	F9XQ92_ZYMTI	FHA domain-containing protein. (655 aa)
	F9XPJ0_ZYMTI	Uncharacterized protein. (588 aa)
	F9XNN0_ZYMTI	Protein kinase domain-containing protein. (556 aa)
	HTB2401	Histone H2B; Belongs to the histone H2B family. (138 aa)
	F9XML2_ZYMTI	ATP-dependent DNA helicase RecQ. (1455 aa)
	F9XMB2_ZYMTI	DUF1767 domain-containing protein. (215 aa)
	F9XLR8_ZYMTI	RECA_2 domain-containing protein. (464 aa)
	F9XKR5_ZYMTI	XPGI domain-containing protein. (677 aa)
	NPR1	NPR1 nitrogen permease reactivator protein from HOG pathway. (734 aa)
	F9XJM5_ZYMTI	Uncharacterized protein. (198 aa)
	F9XJF8_ZYMTI	Serine/threonine-protein phosphatase. (321 aa)
	F9XJ93_ZYMTI	Uncharacterized protein. (426 aa)
	F9XJ10_ZYMTI	Serine/threonine-protein phosphatase. (427 aa)
	SLX1	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (406 aa)
	F9XHP6_ZYMTI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (388 aa)
	F9XF31_ZYMTI	3'-5' exonuclease domain-containing protein. (421 aa)
	F9XDY9_ZYMTI	Uncharacterized protein. (305 aa)
	F9WXM3_ZYMTI	FHA domain-containing protein. (621 aa)
	F9WXU6_ZYMTI	Uncharacterized protein. (328 aa)
	F9X0E2_ZYMTI	BZIP domain-containing protein. (278 aa)
	F9X0E3_ZYMTI	CIA30 domain-containing protein. (274 aa)
	F9X2W7_ZYMTI	Uncharacterized protein. (487 aa)
	F9X3P1_ZYMTI	Uncharacterized protein. (1181 aa)
	F9X3P4_ZYMTI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (419 aa)
	F9X4C6_ZYMTI	Uncharacterized protein. (359 aa)
	F9X4S1_ZYMTI	Uncharacterized protein. (207 aa)
	F9X6H8_ZYMTI	Protein kinase domain-containing protein. (385 aa)
	F9X6K8_ZYMTI	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1997 aa)
	F9X6Y6_ZYMTI	Uncharacterized protein. (128 aa)
	F9X9F8_ZYMTI	XPGI domain-containing protein. (517 aa)
	F9XBA1_ZYMTI	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (636 aa)
	F9XCZ0_ZYMTI	Uncharacterized protein. (691 aa)
	F9XDM2_ZYMTI	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (646 aa)

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WXM3_ZYMTI	F9X0E2_ZYMTI	F9WXM3	F9X0E2	FHA domain-containing protein.	BZIP domain-containing protein.	0.434
F9WXM3_ZYMTI	F9X0E3_ZYMTI	F9WXM3	F9X0E3	FHA domain-containing protein.	CIA30 domain-containing protein.	0.434
F9WXM3_ZYMTI	F9XDN2_ZYMTI	F9WXM3	F9XDN2	FHA domain-containing protein.	Ubiquitin-like domain-containing protein.	0.434
F9WXU6_ZYMTI	F9XBA1_ZYMTI	F9WXU6	F9XBA1	Uncharacterized protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.601
F9WXU6_ZYMTI	F9XCZ0_ZYMTI	F9WXU6	F9XCZ0	Uncharacterized protein.	Uncharacterized protein.	0.443
F9WXU6_ZYMTI	F9XDM2_ZYMTI	F9WXU6	F9XDM2	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.580
F9WXU6_ZYMTI	F9XDU4_ZYMTI	F9WXU6	F9XDU4	Uncharacterized protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.569
F9WXU6_ZYMTI	F9XF31_ZYMTI	F9WXU6	F9XF31	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.969
F9WXU6_ZYMTI	F9XLR8_ZYMTI	F9WXU6	F9XLR8	Uncharacterized protein.	RECA_2 domain-containing protein.	0.941
F9WXU6_ZYMTI	F9XMB2_ZYMTI	F9WXU6	F9XMB2	Uncharacterized protein.	DUF1767 domain-containing protein.	0.616
F9WXU6_ZYMTI	F9XML2_ZYMTI	F9WXU6	F9XML2	Uncharacterized protein.	ATP-dependent DNA helicase RecQ.	0.443
F9WXU6_ZYMTI	F9XRL8_ZYMTI	F9WXU6	F9XRL8	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.443
F9WXU6_ZYMTI	SLX1	F9WXU6	F9XHV0	Uncharacterized protein.	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.	0.577
F9X0E2_ZYMTI	F9WXM3_ZYMTI	F9X0E2	F9WXM3	BZIP domain-containing protein.	FHA domain-containing protein.	0.434
F9X0E2_ZYMTI	F9X4C6_ZYMTI	F9X0E2	F9X4C6	BZIP domain-containing protein.	Uncharacterized protein.	0.434
F9X0E2_ZYMTI	F9X4S1_ZYMTI	F9X0E2	F9X4S1	BZIP domain-containing protein.	Uncharacterized protein.	0.434
F9X0E2_ZYMTI	F9XF31_ZYMTI	F9X0E2	F9XF31	BZIP domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.957
F9X0E2_ZYMTI	F9XQ92_ZYMTI	F9X0E2	F9XQ92	BZIP domain-containing protein.	FHA domain-containing protein.	0.434
F9X0E2_ZYMTI	HTB2401	F9X0E2	F9XND0	BZIP domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.641
F9X0E3_ZYMTI	F9WXM3_ZYMTI	F9X0E3	F9WXM3	CIA30 domain-containing protein.	FHA domain-containing protein.	0.434