7 items (Colobus angolensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC105503213	Uncharacterized protein. (266 aa)
	POLR2I	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (105 aa)
	POLR2C	RNA polymerase II subunit C. (275 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)
	POLR2B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	POLR2D	RNA polymerase II subunit D. (142 aa)

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC105503213	POLR2B	ENSCANP00000015237	ENSCANP00000036332	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
LOC105503213	POLR2C	ENSCANP00000015237	ENSCANP00000022877	Uncharacterized protein.	RNA polymerase II subunit C.	0.999
LOC105503213	POLR2D	ENSCANP00000015237	ENSCANP00000039979	Uncharacterized protein.	RNA polymerase II subunit D.	0.999
LOC105503213	POLR2I	ENSCANP00000015237	ENSCANP00000016968	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
LOC105503213	POLR2K	ENSCANP00000015237	ENSCANP00000036028	Uncharacterized protein.	RNA polymerase II subunit K.	0.999
LOC105503213	POLR2L	ENSCANP00000015237	ENSCANP00000038867	Uncharacterized protein.	RNA polymerase II subunit L.	0.999
POLR2B	LOC105503213	ENSCANP00000036332	ENSCANP00000015237	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
POLR2B	POLR2C	ENSCANP00000036332	ENSCANP00000022877	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit C.	0.999
POLR2B	POLR2D	ENSCANP00000036332	ENSCANP00000039979	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit D.	0.999
POLR2B	POLR2I	ENSCANP00000036332	ENSCANP00000016968	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
POLR2B	POLR2K	ENSCANP00000036332	ENSCANP00000036028	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit K.	0.999
POLR2B	POLR2L	ENSCANP00000036332	ENSCANP00000038867	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit L.	0.999
POLR2C	LOC105503213	ENSCANP00000022877	ENSCANP00000015237	RNA polymerase II subunit C.	Uncharacterized protein.	0.999
POLR2C	POLR2B	ENSCANP00000022877	ENSCANP00000036332	RNA polymerase II subunit C.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR2C	POLR2D	ENSCANP00000022877	ENSCANP00000039979	RNA polymerase II subunit C.	RNA polymerase II subunit D.	0.999
POLR2C	POLR2I	ENSCANP00000022877	ENSCANP00000016968	RNA polymerase II subunit C.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
POLR2C	POLR2K	ENSCANP00000022877	ENSCANP00000036028	RNA polymerase II subunit C.	RNA polymerase II subunit K.	0.999
POLR2C	POLR2L	ENSCANP00000022877	ENSCANP00000038867	RNA polymerase II subunit C.	RNA polymerase II subunit L.	0.999
POLR2D	LOC105503213	ENSCANP00000039979	ENSCANP00000015237	RNA polymerase II subunit D.	Uncharacterized protein.	0.999
POLR2D	POLR2B	ENSCANP00000039979	ENSCANP00000036332	RNA polymerase II subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999