11 items (Colobus angolensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	POLR1C	RNA polymerase I and III subunit C. (350 aa)
	TWISTNB	TWIST neighbor. (338 aa)
	LOC105511705	RNA_pol_L_2 domain-containing protein. (133 aa)
	POLR1E	RNA polymerase I subunit E. (477 aa)
	POLR1A	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1699 aa)
	LOC105523535	RNA_pol_L_2 domain-containing protein. (133 aa)
	CD3EAP	CD3e molecule associated protein. (513 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	POLR2H	RNA polymerase II subunit H. (175 aa)
	ZNRD1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD3EAP	LOC105511705	ENSCANP00000007385	ENSCANP00000028491	CD3e molecule associated protein.	RNA_pol_L_2 domain-containing protein.	0.970
CD3EAP	LOC105523535	ENSCANP00000007385	ENSCANP00000010466	CD3e molecule associated protein.	RNA_pol_L_2 domain-containing protein.	0.970
CD3EAP	POLR1A	ENSCANP00000007385	ENSCANP00000016882	CD3e molecule associated protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
CD3EAP	POLR1C	ENSCANP00000007385	ENSCANP00000038972	CD3e molecule associated protein.	RNA polymerase I and III subunit C.	0.998
CD3EAP	POLR1E	ENSCANP00000007385	ENSCANP00000025453	CD3e molecule associated protein.	RNA polymerase I subunit E.	0.997
CD3EAP	POLR2H	ENSCANP00000007385	ENSCANP00000007242	CD3e molecule associated protein.	RNA polymerase II subunit H.	0.979
CD3EAP	POLR2K	ENSCANP00000007385	ENSCANP00000036028	CD3e molecule associated protein.	RNA polymerase II subunit K.	0.983
CD3EAP	POLR2L	ENSCANP00000007385	ENSCANP00000038867	CD3e molecule associated protein.	RNA polymerase II subunit L.	0.989
CD3EAP	TWISTNB	ENSCANP00000007385	ENSCANP00000030193	CD3e molecule associated protein.	TWIST neighbor.	0.998
CD3EAP	ZNRD1	ENSCANP00000007385	ENSCANP00000006535	CD3e molecule associated protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.997
LOC105511705	CD3EAP	ENSCANP00000028491	ENSCANP00000007385	RNA_pol_L_2 domain-containing protein.	CD3e molecule associated protein.	0.970
LOC105511705	LOC105523535	ENSCANP00000028491	ENSCANP00000010466	RNA_pol_L_2 domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.772
LOC105511705	POLR1A	ENSCANP00000028491	ENSCANP00000016882	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.987
LOC105511705	POLR1C	ENSCANP00000028491	ENSCANP00000038972	RNA_pol_L_2 domain-containing protein.	RNA polymerase I and III subunit C.	0.993
LOC105511705	POLR1E	ENSCANP00000028491	ENSCANP00000025453	RNA_pol_L_2 domain-containing protein.	RNA polymerase I subunit E.	0.983
LOC105511705	POLR2H	ENSCANP00000028491	ENSCANP00000007242	RNA_pol_L_2 domain-containing protein.	RNA polymerase II subunit H.	0.994
LOC105511705	POLR2K	ENSCANP00000028491	ENSCANP00000036028	RNA_pol_L_2 domain-containing protein.	RNA polymerase II subunit K.	0.979
LOC105511705	POLR2L	ENSCANP00000028491	ENSCANP00000038867	RNA_pol_L_2 domain-containing protein.	RNA polymerase II subunit L.	0.993
LOC105511705	TWISTNB	ENSCANP00000028491	ENSCANP00000030193	RNA_pol_L_2 domain-containing protein.	TWIST neighbor.	0.987
LOC105511705	ZNRD1	ENSCANP00000028491	ENSCANP00000006535	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.994