12 items (Colobus angolensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HNF1A	HNF1 homeobox A. (662 aa)
	ABCG1	ATP binding cassette subfamily G member 1. (684 aa)
	SCARB1	Scavenger receptor class B member 1; Belongs to the CD36 family. (509 aa)
	ABCA5	ATP binding cassette subfamily A member 5. (1642 aa)
	APOE	Apolipoprotein E. (189 aa)
	LIPG	Lipase G, endothelial type. (500 aa)
	CLU	Clusterin. (534 aa)
	LIPC	Lipase C, hepatic type. (499 aa)
	APOA2	Apolipoprotein A2. (100 aa)
	ABCA1	ATP binding cassette subfamily A member 1. (2264 aa)
	LCAT	Lecithin-cholesterol acyltransferase. (440 aa)
	CETP	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family. (493 aa)

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA1	APOA2	ENSCANP00000013051	ENSCANP00000010601	ATP binding cassette subfamily A member 1.	Apolipoprotein A2.	0.530
ABCA1	APOE	ENSCANP00000013051	ENSCANP00000019437	ATP binding cassette subfamily A member 1.	Apolipoprotein E.	0.734
ABCA1	CETP	ENSCANP00000013051	ENSCANP00000016325	ATP binding cassette subfamily A member 1.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.720
ABCA1	LCAT	ENSCANP00000013051	ENSCANP00000015211	ATP binding cassette subfamily A member 1.	Lecithin-cholesterol acyltransferase.	0.546
ABCA1	SCARB1	ENSCANP00000013051	ENSCANP00000033562	ATP binding cassette subfamily A member 1.	Scavenger receptor class B member 1; Belongs to the CD36 family.	0.555
ABCG1	APOE	ENSCANP00000025257	ENSCANP00000019437	ATP binding cassette subfamily G member 1.	Apolipoprotein E.	0.557
ABCG1	SCARB1	ENSCANP00000025257	ENSCANP00000033562	ATP binding cassette subfamily G member 1.	Scavenger receptor class B member 1; Belongs to the CD36 family.	0.536
APOA2	ABCA1	ENSCANP00000010601	ENSCANP00000013051	Apolipoprotein A2.	ATP binding cassette subfamily A member 1.	0.530
APOA2	APOE	ENSCANP00000010601	ENSCANP00000019437	Apolipoprotein A2.	Apolipoprotein E.	0.891
APOA2	CETP	ENSCANP00000010601	ENSCANP00000016325	Apolipoprotein A2.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.546
APOA2	CLU	ENSCANP00000010601	ENSCANP00000039028	Apolipoprotein A2.	Clusterin.	0.537
APOA2	LCAT	ENSCANP00000010601	ENSCANP00000015211	Apolipoprotein A2.	Lecithin-cholesterol acyltransferase.	0.594
APOA2	LIPC	ENSCANP00000010601	ENSCANP00000010110	Apolipoprotein A2.	Lipase C, hepatic type.	0.453
APOA2	SCARB1	ENSCANP00000010601	ENSCANP00000033562	Apolipoprotein A2.	Scavenger receptor class B member 1; Belongs to the CD36 family.	0.453
APOE	ABCA1	ENSCANP00000019437	ENSCANP00000013051	Apolipoprotein E.	ATP binding cassette subfamily A member 1.	0.734
APOE	ABCG1	ENSCANP00000019437	ENSCANP00000025257	Apolipoprotein E.	ATP binding cassette subfamily G member 1.	0.557
APOE	APOA2	ENSCANP00000019437	ENSCANP00000010601	Apolipoprotein E.	Apolipoprotein A2.	0.891
APOE	CETP	ENSCANP00000019437	ENSCANP00000016325	Apolipoprotein E.	Cholesteryl ester transfer protein; Involved in the transfer of neutral lipids, including cholesteryl ester and triglyceride, among lipoprotein particles. Allows the net movement of cholesteryl ester from high density lipoproteins/HDL to triglyceride-rich very low density lipoproteins/VLDL, and the equimolar transport of triglyceride from VLDL to HDL; Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP family.	0.785
APOE	CLU	ENSCANP00000019437	ENSCANP00000039028	Apolipoprotein E.	Clusterin.	0.824
APOE	LCAT	ENSCANP00000019437	ENSCANP00000015211	Apolipoprotein E.	Lecithin-cholesterol acyltransferase.	0.626