30 items (Colobus angolensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SEC16A	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. (2296 aa)
	SEC24D	SEC24 homolog D, COPII coat complex component. (1024 aa)
	ENSCANP00000003996	Uncharacterized protein. (212 aa)
	SEC24A	SEC24 homolog A, COPII coat complex component. (1078 aa)
	TBC1D20	TBC1 domain family member 20. (401 aa)
	TRAPPC3	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (182 aa)
	MIA3	MIA SH3 domain ER export factor 3. (1866 aa)
	SEC16B	Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus. (1059 aa)
	PPP6C	Serine/threonine-protein phosphatase. (305 aa)
	TRAPPC11	Trafficking protein particle complex 11. (1095 aa)
	PEF1	Penta-EF-hand domain containing 1. (274 aa)
	SEC24C	Uncharacterized protein. (1094 aa)
	LOC105507813	Uncharacterized protein. (147 aa)
	TRAPPC12	Trafficking protein particle complex 12. (379 aa)
	RAB1A	Uncharacterized protein. (214 aa)
	SEC23A	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (765 aa)
	TMED2	Transmembrane p24 trafficking protein 2. (116 aa)
	TRAPPC1	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (145 aa)
	TRAPPC6A	Trafficking protein particle complex 6A. (173 aa)
	CUL3	Cullin 3; Belongs to the cullin family. (775 aa)
	SCAP	SREBF chaperone. (1279 aa)
	SEC13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (368 aa)
	SEC31B	SEC31 homolog B, COPII coat complex component. (1176 aa)
	TFG	Trafficking from ER to golgi regulator. (400 aa)
	SEC24B	SEC24 homolog B, COPII coat complex component. (1250 aa)
	SEC23B	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (684 aa)
	KLHL12	BTB domain-containing protein. (568 aa)
	LOC105515301	Uncharacterized protein. (369 aa)
	PREB	WD_REPEATS_REGION domain-containing protein. (417 aa)
	VAPB	VAMP associated protein B and C. (243 aa)

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	KLHL12	ENSCANP00000037222	ENSCANP00000013571	Cullin 3; Belongs to the cullin family.	BTB domain-containing protein.	0.981
CUL3	PEF1	ENSCANP00000037222	ENSCANP00000035380	Cullin 3; Belongs to the cullin family.	Penta-EF-hand domain containing 1.	0.594
CUL3	SEC31B	ENSCANP00000037222	ENSCANP00000023963	Cullin 3; Belongs to the cullin family.	SEC31 homolog B, COPII coat complex component.	0.419
ENSCANP00000003996	SEC13	ENSCANP00000003996	ENSCANP00000030967	Uncharacterized protein.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.946
ENSCANP00000003996	SEC23A	ENSCANP00000003996	ENSCANP00000028771	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.877
ENSCANP00000003996	SEC23B	ENSCANP00000003996	ENSCANP00000015790	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.877
ENSCANP00000003996	SEC24A	ENSCANP00000003996	ENSCANP00000006816	Uncharacterized protein.	SEC24 homolog A, COPII coat complex component.	0.874
ENSCANP00000003996	SEC24B	ENSCANP00000003996	ENSCANP00000019312	Uncharacterized protein.	SEC24 homolog B, COPII coat complex component.	0.874
ENSCANP00000003996	SEC24C	ENSCANP00000003996	ENSCANP00000025178	Uncharacterized protein.	Uncharacterized protein.	0.876
ENSCANP00000003996	SEC24D	ENSCANP00000003996	ENSCANP00000003692	Uncharacterized protein.	SEC24 homolog D, COPII coat complex component.	0.876
ENSCANP00000003996	SEC31B	ENSCANP00000003996	ENSCANP00000023963	Uncharacterized protein.	SEC31 homolog B, COPII coat complex component.	0.782
ENSCANP00000003996	TFG	ENSCANP00000003996	ENSCANP00000023272	Uncharacterized protein.	Trafficking from ER to golgi regulator.	0.711
ENSCANP00000003996	TMED2	ENSCANP00000003996	ENSCANP00000029752	Uncharacterized protein.	Transmembrane p24 trafficking protein 2.	0.463
ENSCANP00000003996	TRAPPC1	ENSCANP00000003996	ENSCANP00000030535	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.425
ENSCANP00000003996	TRAPPC6A	ENSCANP00000003996	ENSCANP00000030721	Uncharacterized protein.	Trafficking protein particle complex 6A.	0.411
KLHL12	CUL3	ENSCANP00000013571	ENSCANP00000037222	BTB domain-containing protein.	Cullin 3; Belongs to the cullin family.	0.981
KLHL12	PEF1	ENSCANP00000013571	ENSCANP00000035380	BTB domain-containing protein.	Penta-EF-hand domain containing 1.	0.819
KLHL12	SEC13	ENSCANP00000013571	ENSCANP00000030967	BTB domain-containing protein.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.653
KLHL12	SEC23A	ENSCANP00000013571	ENSCANP00000028771	BTB domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.517
KLHL12	SEC23B	ENSCANP00000013571	ENSCANP00000015790	BTB domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.533