(23 nodes) Proteasome, subunit alpha/beta network (Colobus angolensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PSMA8	Proteasome subunit alpha type. (250 aa)
	PSMB7	Proteasome subunit beta. (277 aa)
	LOC105516879	Proteasome endopeptidase complex. (214 aa)
	PSMB11	Proteasome subunit beta. (300 aa)
	PSMA6	Proteasome subunit alpha type. (252 aa)
	PSMB2	Proteasome subunit beta. (201 aa)
	PSMA1	Proteasome subunit alpha type. (269 aa)
	ENSCANP00000011827	Uncharacterized protein. (106 aa)
	PSMA4	Proteasome subunit alpha type. (261 aa)
	PSMA5	Proteasome subunit alpha type. (241 aa)
	PSMB6	Proteasome subunit beta. (245 aa)
	PSMB10	Proteasome subunit beta. (273 aa)
	PSMA7	Proteasome endopeptidase complex. (178 aa)
	PSMB5	Proteasome subunit beta. (263 aa)
	PSMB9	Proteasome subunit beta 9. (177 aa)
	PSMA3	Proteasome subunit alpha type. (255 aa)
	PSMB4	Proteasome subunit beta; Belongs to the peptidase T1B family. (274 aa)
	LOC105500584	Uncharacterized protein. (180 aa)
	PSMA2	Proteasome subunit alpha type. (234 aa)
	PSMB1	Proteasome subunit beta. (241 aa)
	PSMB8	Proteasome subunit beta. (284 aa)
	ENSCANP00000023943	Proteasome subunit beta. (204 aa)
	ENSCANP00000017387	Proteasome subunit beta. (181 aa)

Your Current Organism:

Colobus angolensis

NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCANP00000011827	ENSCANP00000023943	ENSCANP00000011827	ENSCANP00000023943	Uncharacterized protein.	Proteasome subunit beta.	0.984
ENSCANP00000011827	LOC105516879	ENSCANP00000011827	ENSCANP00000003191	Uncharacterized protein.	Proteasome endopeptidase complex.	0.982
ENSCANP00000011827	PSMA1	ENSCANP00000011827	ENSCANP00000011311	Uncharacterized protein.	Proteasome subunit alpha type.	0.994
ENSCANP00000011827	PSMA2	ENSCANP00000011827	ENSCANP00000029467	Uncharacterized protein.	Proteasome subunit alpha type.	0.994
ENSCANP00000011827	PSMA3	ENSCANP00000011827	ENSCANP00000032399	Uncharacterized protein.	Proteasome subunit alpha type.	0.994
ENSCANP00000011827	PSMA4	ENSCANP00000011827	ENSCANP00000013020	Uncharacterized protein.	Proteasome subunit alpha type.	0.994
ENSCANP00000011827	PSMA5	ENSCANP00000011827	ENSCANP00000013582	Uncharacterized protein.	Proteasome subunit alpha type.	0.994
ENSCANP00000011827	PSMA6	ENSCANP00000011827	ENSCANP00000007815	Uncharacterized protein.	Proteasome subunit alpha type.	0.982
ENSCANP00000011827	PSMA7	ENSCANP00000011827	ENSCANP00000015515	Uncharacterized protein.	Proteasome endopeptidase complex.	0.988
ENSCANP00000011827	PSMA8	ENSCANP00000011827	ENSCANP00000015069	Uncharacterized protein.	Proteasome subunit alpha type.	0.983
ENSCANP00000011827	PSMB1	ENSCANP00000011827	ENSCANP00000028191	Uncharacterized protein.	Proteasome subunit beta.	0.993
ENSCANP00000011827	PSMB10	ENSCANP00000011827	ENSCANP00000016146	Uncharacterized protein.	Proteasome subunit beta.	0.987
ENSCANP00000011827	PSMB11	ENSCANP00000011827	ENSCANP00000005612	Uncharacterized protein.	Proteasome subunit beta.	0.961
ENSCANP00000011827	PSMB2	ENSCANP00000011827	ENSCANP00000008107	Uncharacterized protein.	Proteasome subunit beta.	0.984
ENSCANP00000011827	PSMB4	ENSCANP00000011827	ENSCANP00000030647	Uncharacterized protein.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.994
ENSCANP00000011827	PSMB5	ENSCANP00000011827	ENSCANP00000037094	Uncharacterized protein.	Proteasome subunit beta.	0.986
ENSCANP00000011827	PSMB6	ENSCANP00000011827	ENSCANP00000013989	Uncharacterized protein.	Proteasome subunit beta.	0.989
ENSCANP00000011827	PSMB7	ENSCANP00000011827	ENSCANP00000000349	Uncharacterized protein.	Proteasome subunit beta.	0.987
ENSCANP00000011827	PSMB8	ENSCANP00000011827	ENSCANP00000026793	Uncharacterized protein.	Proteasome subunit beta.	0.985
ENSCANP00000011827	PSMB9	ENSCANP00000011827	ENSCANP00000035666	Uncharacterized protein.	Proteasome subunit beta 9.	0.989