STRINGSTRING
LOC105527575 LOC105527575 PAPOLA PAPOLA SLU7 SLU7 FIP1L1 FIP1L1 ENSCANP00000001557 ENSCANP00000001557 CASC3 CASC3 THOC3 THOC3 LOC105520394 LOC105520394 BCL2L2-PABPN1 BCL2L2-PABPN1 C12orf50 C12orf50 CPSF4 CPSF4 FYTTD1 FYTTD1 ENSCANP00000008386 ENSCANP00000008386 POLDIP3 POLDIP3 SARNP SARNP SRSF2 SRSF2 THOC7 THOC7 SRRM1 SRRM1 SRSF4 SRSF4 ENSCANP00000010860 ENSCANP00000010860 UPF3B UPF3B MAGOHB MAGOHB SRSF1 SRSF1 ENSCANP00000013556 ENSCANP00000013556 SREK1 SREK1 SRSF5 SRSF5 CSTF2 CSTF2 ENSCANP00000014754 ENSCANP00000014754 LOC105512604 LOC105512604 U2AF2 U2AF2 THOC5 THOC5 PCF11 PCF11 CPSF1 CPSF1 WDR33 WDR33 LOC105515689 LOC105515689 SRSF9 SRSF9 ENSCANP00000021476 ENSCANP00000021476 ALYREF ALYREF CLP1 CLP1 THOC1 THOC1 CPSF3 CPSF3 ENSCANP00000022142 ENSCANP00000022142 MAGOH MAGOH CPSF4L CPSF4L U2AF1L4 U2AF1L4 THOC2 THOC2 CSTF3 CSTF3 ZC3H11A ZC3H11A LOC105517234 LOC105517234 NUDT21 NUDT21 NCBP1 NCBP1 DDX39A DDX39A CPSF6 CPSF6 DHX38 DHX38 NCBP2 NCBP2 SRSF3 SRSF3 SRSF11 SRSF11 ENSCANP00000032788 ENSCANP00000032788 SRSF7 SRSF7 CSTF1 CSTF1 SYMPK SYMPK THOC6 THOC6 DDX39B DDX39B RNPS1 RNPS1 ENSCANP00000035488 ENSCANP00000035488 CPSF2 CPSF2 RBM8A RBM8A CHTOP CHTOP SRSF6 SRSF6 ENSCANP00000039337 ENSCANP00000039337 ENSCANP00000039402 ENSCANP00000039402 EIF4A3 EIF4A3 CDC40 CDC40 ENSCANP00000040326 ENSCANP00000040326
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC105527575Uncharacterized protein. (343 aa)
PAPOLAPoly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (709 aa)
SLU7SLU7 homolog, splicing factor. (586 aa)
FIP1L1Factor interacting with PAPOLA and CPSF1. (594 aa)
ENSCANP00000001557RRM domain-containing protein. (316 aa)
CASC3CASC3 exon junction complex subunit. (704 aa)
THOC3THO complex 3. (351 aa)
LOC105520394Uncharacterized protein. (225 aa)
BCL2L2-PABPN1BCL2L2-PABPN1 readthrough. (333 aa)
C12orf50Chromosome 12 open reading frame 50. (414 aa)
CPSF4Cleavage and polyadenylation specific factor 4. (269 aa)
FYTTD1Uncharacterized protein. (286 aa)
ENSCANP00000008386PWI domain-containing protein. (776 aa)
POLDIP3DNA polymerase delta interacting protein 3. (421 aa)
SARNPSAP domain containing ribonucleoprotein. (210 aa)
SRSF2Serine and arginine rich splicing factor 2. (221 aa)
THOC7THO complex 7. (201 aa)
SRRM1Serine and arginine repetitive matrix 1. (913 aa)
SRSF4Serine and arginine rich splicing factor 4. (494 aa)
ENSCANP00000010860Uncharacterized protein. (148 aa)
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (318 aa)
MAGOHBMago homolog B, exon junction complex subunit. (148 aa)
SRSF1Uncharacterized protein. (253 aa)
ENSCANP00000013556RRM domain-containing protein. (264 aa)
SREK1Splicing regulatory glutamic acid and lysine rich protein 1. (626 aa)
SRSF5Serine and arginine rich splicing factor 5. (272 aa)
CSTF2Cleavage stimulation factor subunit 2. (597 aa)
ENSCANP00000014754Uncharacterized protein. (194 aa)
LOC105512604RRM domain-containing protein. (290 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (445 aa)
THOC5THO complex 5. (663 aa)
PCF11PCF11 cleavage and polyadenylation factor subunit. (1555 aa)
CPSF1Cleavage and polyadenylation specific factor 1. (1403 aa)
WDR33WD repeat domain 33. (1336 aa)
LOC105515689Uncharacterized protein. (300 aa)
SRSF9Serine and arginine rich splicing factor 9. (222 aa)
ENSCANP00000021476Uncharacterized protein. (427 aa)
ALYREFAly/REF export factor. (265 aa)
CLP1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (436 aa)
THOC1THO complex 1. (657 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (639 aa)
ENSCANP00000022142Uncharacterized protein. (138 aa)
MAGOHMago homolog, exon junction complex subunit. (146 aa)
CPSF4LCleavage and polyadenylation specific factor 4 like. (179 aa)
U2AF1L4C3H1-type domain-containing protein. (203 aa)
THOC2THO complex 2. (1593 aa)
CSTF3Cleavage stimulation factor subunit 3. (717 aa)
ZC3H11AUncharacterized protein. (810 aa)
LOC105517234Uncharacterized protein. (146 aa)
NUDT21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
NCBP1Nuclear cap binding protein subunit 1. (790 aa)
DDX39AUncharacterized protein. (427 aa)
CPSF6Cleavage and polyadenylation specific factor 6. (568 aa)
DHX38DEAH-box helicase 38. (1227 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (138 aa)
SRSF3Serine and arginine rich splicing factor 3. (164 aa)
SRSF11Serine and arginine rich splicing factor 11. (483 aa)
ENSCANP00000032788Uncharacterized protein. (157 aa)
SRSF7Serine and arginine rich splicing factor 7. (238 aa)
CSTF1Cleavage stimulation factor subunit 1. (431 aa)
SYMPKSymplekin. (1299 aa)
THOC6THO complex 6. (341 aa)
DDX39BDExD-box helicase 39B. (428 aa)
RNPS1RNA binding protein with serine rich domain 1. (305 aa)
ENSCANP00000035488C3H1-type domain-containing protein. (206 aa)
CPSF2Cleavage and polyadenylation specificity factor subunit 2. (761 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
CHTOPChromatin target of PRMT1. (277 aa)
SRSF6RRM domain-containing protein. (292 aa)
ENSCANP00000039337Uncharacterized protein. (110 aa)
ENSCANP00000039402Uncharacterized protein. (64 aa)
EIF4A3Eukaryotic translation initiation factor 4A3. (362 aa)
CDC40Cell division cycle 40. (579 aa)
ENSCANP00000040326U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
Your Current Organism:
Colobus angolensis
NCBI taxonomy Id: 336983
Other names: C. angolensis palliatus, Colobus angolensis palliatus
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